Table 2.

Genotyping call rates and Hardy-Weinberg equilibrium (HWE) for 33 loci in ChinaPCa¹

Chromosome	SNP	Alleles	Call Rate		HWE in Controls2
			Set 1	Set 2	Set 1	Set 2
2	rs1465618	A>G	0.98	0.98	0.73	0.12
2	rs721048	G>A	0.98	0.97	0.68	0.25
2	rs12621278	A>G	0.98	0.99	0.75	0.12
3	rs2660753	C>T	0.98	0.98	0.44	0.14
3	rs10934853	C>A	0.97	0.98	0.64	0.31
4	rs17021918	C>T	0.97	0.98	0.29	0.07
4	rs7679673	A>C	0.98	0.99	0.03	0.82
6	rs9364554	C>T	0.98	0.97	0.82	0.75
7	rs10486567	T>C	0.98	0.99	0.72	0.45
7	rs6465657	C>T	0.98	0.98	0.17	0.14
8	rs2928679	G>A	0.98	0.98	0.58	0.32
8	rs1512268	G>A	0.98	0.99	0.11	0.03
8	rs10086908	T>C	0.97	0.99	0.97	0.17
8	rs16901979	C>A	0.97	0.97	0.99	0.74
8	rs16902094	A>G	0.97	0.98	0.29	0.94
8	rs620861	G>A	0.98	0.98	0.41	0.89
8	rs6983267	T>G	0.98	0.97	0.69	0.82
8	rs1447295	C>A	0.98	0.98	0.15	0.17
9	rs1571801	G>T	0.98	0.99	0.64	0.02
10	rs10993994	T>C	0.96	0.98	0.29	0.31
10	rs4962416	A>G	0.97	0.97	0.93	0.73
11	rs7127900	G>A	0.98	0.97	0.58	0.01
11	rs12418451	G>A	0.98	0.99	0.52	0.65
11	rs10896449	A>G	0.97	0.53	0.33	0.53
17	rs11649743	C>T	0.97	0.97	0.55	0.55
17	rs4430796	T>C	0.98	0.98	0.72	0.71
17	rs1859962	T>G	0.97	0.98	0.66	0.51
19	rs8102476	A>G	0.97	0.99	0.19	0.79
19	rs887391	T>C	0.97	0.98	0.64	0.96
19	rs2735839	G>A	0.98	0.98	0.34	0.40
22	rs9623117	T>C	0.98	0.99	0.64	0.88
22	rs5759167	G>T	0.98	0.99	0.37	0.77
X	rs5945619	A>G	0.98	0.98	--	--

¹The samples genotyped at the Center for Cancer Genomics in Wake Forest University are referred to as set 1 and the remaining samples genotyped at the Fudan-VARI Center for Genetic Epidemiology in Fudan University are considered as set 2;

²P values of tests for Hardy-Weinberg equilibrium (HWE).