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. 2013 Feb 25;8(2):e57506. doi: 10.1371/journal.pone.0057506

Table 1. Primers used to amplify the specific insert.

Sequence variant Primer Sequence 5′->3′ Size (bp)
c.6_9dup (p.L4DfsX39)MYO7A L4DfsX39_D_XhoI AAGAAT CTCGAG AGTGGCTGAGAGAAGAATTC 563
L4DfsX39_R_NheI AAGAAT GCTAGC GGATCCAGAGATGTGTGTAA
c.470G>A (p.S157N) MYO7A S157N_D_XhoI AAGAAT CTCGAG AGACTCCACCTCCCTCTTCA 668
S157N_R_NheI AAGAAT GCTAGC GCTAATGTGAGCTTTGGTAGC
c.640G>A (p.G214R) MYO7Ac.721C>G (p.R241G) MYO7A G214R & R241G_D_XhoI AAGAAT CTCGAG GAAGGTGAAGGAGAGTGCG 703
G214R & R241G_R_NheI AAGAAT GCTAGC TTCATGGTGGGATTTCCAGC
c.1097T>C (p.L366P)MYO7A L366P_D_XhoI AAGAAT CTCGAG TGACATGCTGGAGGGAGTTA 608
L366P_R_NheI AAGAAT GCTAGC CTGACCAAAGCAGGCCAAAA
c.1342_1343delAG (p.S448LfsX2) MYO7A S448LfsX2_D_XhoI AAGAAT CTCGAG TCTCCAGGCAGAGGGAACAG 524
S448LfsX2_R_NheI AAGAAT GCTAGC AGCCAGGCTCAGCTGACCTT
c.3508G>A (p.E1170K) MYO7A E1170K_D_XhoI AAGAAT CTCGAG GAGGTGCTTTATGCCCGATG 545
E1170K_R_NheI AAGAAT GCTAGC GAGTGTGGGGAAAAGAGGTG
c.3652G>A (p.G1218R) MYO7A G1218R_D_XhoI AAGAAT CTCGAG ATAGATGGTGGAGCTGAGAG 370
G1218R_R_NheI AAGAAT GCTAGC GCACTGGACACACACACACA
c.5581C>T (p.R1861X) MYO7A R1861X_D_XhoI AAGAAT CTCGAG ACTAGTTGCATCTGGCTGTC 543
R1861X_R_NheI AAGAAT GCTAGC ATCCTGAGCAGCTGCAGGAT
c.1086-12G>A USH1C USH1C_D_XhoI AAGAAT CTCGAG ACAAGCTCGGGGACTTTGCT 438
USH1C_R_NheI AAGAAT GCTAGC ATGGTCTCTGACCCACAGCT
c.2289+1G>A CDH23 c.2289_D_XhoI AAGAAT CTCGAG CAAATATTTCCTCCTCATGG 636
c.2289_R_NheI AAGAAT GCTAGC GCAGGAGAGAAAGTATTTCA
c.6049G>A (p.G2017S) CDH23 G2017_D_XhoI AAGAAT CTCGAG CTTGCTCACCACTCTCATGT 594
G2017_R_NheI AAGAAT GCTAGC GTATCGTCTCCAAGCCTCTT
c.8722+1delG CDH23 c.8722_D_XhoI AAGAAT CTCGAG TTCTGGGCAACACTCCGTGA 1226
c.8722_R_NheI AAGAAT GCTAGC GGATGGACGGATAACTAATGG
c.1304_1305insC PCDH15 c.1304_D_XhoI AAGAAT CTCGAG CAGAAGACTGAAGCAATTAAGCC 647
c.1304_R_NheI AAGAAT GCTAGC ATATACTGAATATCTGCAAGCTG
c.2868+5G>A PCDH15 c.2868_D_XhoI AAGAAT CTCGAG ATTCCAGTGGAACGGCCTTC 533
c.2868_R_NheI AAGAAT GCTAGC TATGCTCTGTACCTGTGGATG
c.3717+2dupTT PCDH15 c.3717_D_XhoI AAGAAT CTCGAG CAGAATTATACCTATGTCCC 635
c.3717_R_NheI AAGAAT GCTAGC AGTGACTAACAATCTGAGTG
c.521A>G (p.N174S) PCDH15 N174S_D_XhoI AAGAAT CTCGAG TTCTTCGCCCATAGCAAGA 605
N174S_R_NheI AAGAAT GCTAGC TGAGGCATATTATACCTATG
c.1737C>G (p.Y579X) PCDH15 Y579X_D_XhoI AAGAAT CTCGAG AGTATTGTAACAGGACACAG 596
Y579X_R_NheI AAGAAT GCTAGC CCTCTGATATTGTCCTCTTC

Tails added at the beginning of the primer are indicated in bold.

Enzyme restriction sites used in this study are indicated in italics.