Table 3. Primers used to amplify fragments of MYO7A and CDH23 cDNAs from nasal cells.
Gene | Exons | Primers | Sequence 5′->3′ | Size(bp) |
MYO7A | 1–5 | MYO_EXP_1-5-EXT-D | AGAGACAAGAGACACACACA | 628 |
MYO_EXP_1-5-EXT-R | CTTCTTGTTGGTATACTGGC | |||
MYO_EXP_1-5-INT-D | TAGAACGAGACTTGGAGCCA | 490 | ||
MYO_EXP_1-5-INT-R | TTCACAGCCACCAGGATGGA | |||
3–9 | MYO_EXP_3-9-EXT-D | ACCATGTGTGGATGGACCTG | 937 | |
MYO_EXP_3-9-EXT-R | CTTCGAGATCTCCCAGTTCT | |||
MYO_EXP_3-9-INT-D | ACTCTGGGCAGGTCCAGGT | 806 | ||
MYO_EXP_3-9-INT-R | TGTTGGCGTACTCCTGGCT | |||
8–14 | MYO_EXP_8-14-EXT-D | TGTTCTACTGCATGCTGGAG | 906 | |
MYO_EXP_8-14-EXT-R | CCTGCAAAATGGTTGATGCC | |||
MYO_EXP_8-14-INT-D | AAGAAGAAGCTGGGTTGGG | 811 | ||
MYO_EXP_8-14-INT-R | TTGGCGTTGAGCTTGTGCT | |||
25–33 | MYO_EXP_25-33-EXT-D | ATGAGACCCTGGGCAAGAAG | 1136 | |
*MYO_EXP_25-33-EXT-R | CTTCTGGGCATCAGTTCTCC | |||
MYO_EXP_25-33-INT-D | AGGGCCAGAAGAAGAGCAGT | 924 | ||
MYO_EXP_25-33-INT-R | CGCTCCAGGATCATCTCAGA | |||
38–45 | MYO_EXP_38-45-EXT-D | TCCTATGACTACTTCAGGCC | 1010 | |
MYO_EXP_38-45-EXT-R | GGGGAAGTAGGACTTGTCCT | |||
MYO_EXP_38-45-INT-D | TCAAGCAGGCGCTGCTCAAGA | 835 | ||
MYO_EXP_38-45-INT-R | CGTGCACTTGTGGTAGCCTC | |||
CDH23 | 18–24 | CDH_EXP_18-24-EXT-D | ATGAACAGATATCCAATGGGC | 790 |
CDH_EXP_18-24-EXT-R | GGTTCTGAAAGGTGGGGTCA | |||
CDH_EXP_18-24-INT-D | AATGACAACCCTCCCACCTT | 627 | ||
CDH_EXP_18-24-INT-R | CACTGCTGGTGGCTTTCAGA | |||
43–49 | CDH_EXP_43-49-EXT-D | CATCAACGACAACGACCCTGT | 1084 | |
CDH_EXP_43-49-EXT-R | GGTTGAGGTCGTGGTCAATG | |||
CDH_EXP_43-49-INT-D | TCTGTGAAGGACAACCCGGA | 708 | ||
CDH_EXP_43-49-INT-R | GAATGGTGACAATGGCTGTG | |||
57–63 | CDH_EXP_57-63-EXT-D | CTCATCTTGGTGGCCAGCGAC | 1015 | |
CDH_EXP_57-63-EXT-R | CCGGCAGCCGGACAGAGAT | |||
CDH_EXP_57-63-INT-D | TTCATCGTCAAGGCCTCCAG | 713 | ||
CDH_EXP_57-63-INT-R | TAGCTGCTCCTTGTTCTCA |
The primer MYO_EXP_25-33-EXT-R was designed by Vaché et al. [11].