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. 2013 Feb 25;8(2):e56925. doi: 10.1371/journal.pone.0056925

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© 2013 Dalquen et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Pairwise alignment scores compared to Percent Accepted Mutation (PAM) distance for one run of mammalia-like dataset 1. A) For insertion and deletion rate 0.001. Scores were normalised by the sum of the aligned characters in both sequences. ; B) with 18 percent ambiguous characters. Scores were normalised by the sum of the aligned characters in both sequences. .

Inline graphic — Pairwise alignment scores compared to Percent Accepted Mutation (PAM) distance for one run of mammalia-like dataset 1. A) For insertion and deletion rate 0.001. Scores were normalised by the sum of the aligned characters in both sequences. ; B) with 18 percent ambiguous characters. Scores were normalised by the sum of the aligned characters in both sequences. .

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