Table 1.
Alignment statistics for each strain and region.
| Region | Strain | # mice | Total readsa | Reads removedb | Unique hitsc | Parameter hitsd | # Exon junctionse |
|---|---|---|---|---|---|---|---|
| Striatum | ILS | 3 | 26927097 ± 882830 | 4923 (0.0184%) | 72.45% | 88.89% | 80214 |
| ISS | 3 | 26466323 ± 1020682 | 5122 (0.0195%) | 73.97% | 89.63% | 83274 | |
| Whole Brain | ILS | 3 | 12786365 ± 1355373 | 3301 (0.0273%) | 74.78% | 89.17% | 72643 |
| ISS | 3 | 13130036 ± 481554 | 1853 (0.0141%) | 74.37% | 88.31% | 71220 |
a
Total number of short reads generated per group with standard deviation.
b
Low complexity reads are filtered prior to any attempt to align.
c
Percent of reads aligned to exactly one region of the genome.
d
Percent of reads aligned when allowing for up to 10 alignments.
e
Number of unique exon boundaries identified.