Fig. 1.

Overview of the three main components of the Grape RNA-Seq analysis pipeline environment. Buildout: performs the initial configuration. MySQL: two databases are used, one containing information specific to the datasets analyzed such as quantifications-detected elements, etc. Another contains information dependent on genome and annotation, as well as meta-information that allows for the linking of the different datasets. Raisin web application: allows the visualization of the analysis summaries using a web browser