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. 2013 Feb 15;14(Suppl 2):S2. doi: 10.1186/1471-2164-14-S2-S2

Table 2.

Comparisons of the algorithms when l = 100.

e c SpeedHap Fast Hare 2d-mec HapCUT MLF SHR-three DGS Ours
0.0 3 0.999 0.999 0.990 1.000 0.973 0.816 1.000 1.000
5 1.000 0.999 0.997 1.000 0.992 0.861 1.000 1.000
8 1.000 1.000 1.000 1.000 0.997 0.912 1.000 1.000
10 1.000 1.000 1.000 1.000 0.998 0.944 1.000 1.000
0.1 3 0.895 0.919 0.912 0.929 0.889 0.696 0.930 0.973
5 0.967 0.965 0.951 0.920 0.970 0.738 0.985 0.996
8 0.989 0.993 0.983 0.901 0.985 0.758 0.989 0.999
10 0.990 0.998 0.988 0.892 0.995 0.762 0.997 1.000
0.2 3 0.623 0.715 0.738 0.782 0.725 0.615 0.725 0.903
5 0.799 0.797 0.793 0.838 0.836 0.655 0.813 0.963
8 0.852 0.881 0.873 0.864 0.918 0.681 0.878 0.990
10 0.865 0.915 0.894 0.871 0.938 0.699 0.917 0.996
0.3 3 0.480 0.617 0.623 0.602 0.618 0.557 0.611 0.776
5 0.637 0.639 0.640 0.629 0.653 0.599 0.647 0.874
8 0.667 0.661 0.675 0.673 0.697 0.632 0.663 0.950
10 0.676 0.675 0.678 0.709 0.715 0.632 0.688 0.972

The columns e and c refer to the error rate and coverage rate, respectively. Columns 3-9 represent the reconstruction rate of the seven algorithms, i.e. SpeedHap, Fast Hare, 2d-mec, HapCUT, MLF, SHR-three and DGS. For each combination of e and c, the best among the seven algorithms is highlighted in bold. The last column lists the reconstruction rate of our algorithm.