Skip to main content
. 2013 Jan 31;14:68. doi: 10.1186/1471-2164-14-68

Table 1.

Predicted TF sites in the PRE

Factor Sequence within PREa MW (kDa)c
AP2
GGGGTGGGCCG
32, 40, 47, 48, 49, 50, 51, 52
BTEB1e
GAGCGG
 
 
GGCCGG
 
BTEB2e
GAGCGG
25
 
GGCCGG
 
GATA1
GGGTGGGC
43, 51
 
CCGGATCAGc
 
GATA2
CCGGATCAGc
50
Msx1e
GAGCGG
31
 
GGCCGG
 
Pax4α
GGGGTGGGCCGG
38
PuF
GGGTGGG
17
R
GTGCCGAGCGGGGTGGGC
67
SP1b,e
GGGTGG
81, 95, 105
 
TGGGCCGGATCAGctg
 
 
GAGCGG
 
 
GGCCGG
 
TCERG1
CGAGTG
122, 124d
 
CGAGCG
 
USF1
GGATCAGctgactc
34, 43, 55
USF2 GGATCAGctgactc 37, 44

aAll sequences presented in the same orientation as the PRE. Partial sites are also listed, with bases that extend past the PRE indicated by dashes.

bTwo distinct SP1 sites were identified in the wildtype PRE sequence in addition to the GC Box.

cUnless otherwise indicated, MW are for isoforms listed in the TransFac database [42].

dMW is calculated from predicted genomic amino acid sequence.

eOne of several potential GC Box-binding factors.