Table 12.
Sequences for interspecies PRE sequence comparison
| Species | Abbreviation | Common name | Sequence | Loc.a | Base weightb |
|---|---|---|---|---|---|
|
Homo sapiens |
Hom sap |
human |
[GenBank:NT_011512.1] |
13204753.13205282 |
11 |
|
Pan troglodytes |
Pan tro |
chimpanzee |
[GenBank:NT_106996.1] |
12354873.12355401 |
11 |
|
Gorilla gorilla |
Gor gor |
western gorilla |
Ensembl:gorGor3.1:21 |
14453005.14453533 |
10 |
|
Pongo pygmaeus |
Pon pyg |
Bornean orangutan |
[GenBank:NW_002891078.1] |
100309.100838 |
10 |
|
Nomascus leucogenys |
Nom leu |
northern white-cheeked gibbon |
[Genbank:NW_003501402] |
11777748.11778275 |
7 |
|
Macaca mulatta |
Mac mul |
rhesus monkey |
[GenBank:NW_001114168.1] |
7908454.7908980 |
7 |
|
Callithrix jacchus |
Cal jac |
common marmoset |
[GenBank:NW_003184659] |
4142710.4143249 |
6 |
|
Tarsius syrichta |
Tar syr |
Philippine tarsier |
[GenBank:ABRT010367312] |
35.605 |
5 |
|
Otolemur garnettii |
Oto gar |
greater galago |
Ensembl:scaffold:OtoGar3:GL873528.1 |
10760940.10765774 |
4 |
|
Cavia porcellus |
Cav por |
guinea pig |
[GenBank:NT_176367] |
7334345.7334880 |
10 |
|
Octodon degus |
Oct deg |
common degu |
[GenBank:AJSA01048215] |
19979.20497 |
10 |
|
Heterocephalus glaber |
Het gla |
naked mole rat |
[GenBank:AFSB01163805] |
427.1000 |
6 |
|
Ictidomys tridecemlineatus |
Ict tri |
thirteen-lined ground squirrel |
[GenBank:AAQQ01741479] |
107.624 |
9 |
|
Mus musculus |
Mus mus |
house mouse |
[GenBank:NT_039625.8] |
19878914.19879574 |
9 |
|
Rattus norvegicus |
Rat nor |
Norway rat |
[GenBank:NW_047354] |
24693771.24694300 |
8 |
|
Dipodomys ordii |
Dip ord |
Ord’s kangaroo rat |
[GenBank:ABRO01075802] |
1.581 |
6 |
|
Oryctolagus cuniculus |
Ory cun |
European rabbit |
[GenBank:NW_003159292] |
59870509.59871025 |
5 |
|
Ochotona princeps |
Och pri |
American pika |
[GenBank:AAYZ01049311] |
693.1006 |
5 |
|
Bos primigenius taurus |
Bos pri t |
cow |
[GenBank:NW_003103795.1] |
2852543.2853063 |
12 |
|
Bos primigenius indicus |
Bos pri i |
zebu |
[GenBank:AGFL01000631] |
71936.72456 |
12 |
|
Tursiops truncatus |
Tur tru |
bottlenose dolphin |
[GenBank:ABRN02546477] |
189.717 |
7 |
|
Sus scrofa |
Sus scr |
pig |
[GenBank:NW_003611878] |
681338.681875 |
6 |
|
Ailuropoda melanoleuca |
Ail mel |
giant panda |
[GenBank:NW_003217675] |
561990.562540 |
8 |
|
Mustela puturius furo |
Mus put f |
domestic ferret |
[GenBank:AEYP01042946] |
556.1076 |
8 |
|
Canis lupus familiaris |
Can lup f |
dog |
[GenBank:NW_003726114] |
21614163.21614717 |
7 |
|
Pteropus vampyrus |
Pte vam |
flying fox |
[GenBank:ABRP01159960] |
503.1000 |
4 |
|
Condylura cristata |
Con cry |
star-nosed mole |
[GenBank:AJFV01010076] |
10886.11380 |
3 |
|
Loxodonta africanus |
Lox afr |
African elephant |
[GenBank:NW_003573433.1] |
30067875.30068350 |
4 |
|
Procavia capensis |
Pro cap |
rock hyrax |
[GenBank:ABRQ01094447] |
1072.1437 |
4 |
|
Echinops telfairi |
Ech tel |
lesser hedgehog tenrec |
[GenBank:AAIY01071949] |
2252.2666 |
3 |
|
Choloepus hoffmanni |
Cho hof |
Hoffman’s two-toed sloth |
[GenBank:ABVD01435293] |
1.364 |
3 |
|
Dasypus novemcinctus |
Das nov |
nine-banded armadillo |
[GenBank:AAGV03159065] |
1.297 |
3 |
|
Macropus eugenii |
Mac eug |
Tammar wallaby |
[GenBank:ABQO020034033] |
684.1293 |
2 |
|
Sarcophilus harrisii |
Sar har |
Tasmanian devil |
[GenBank:AEFK01137980] |
744.1216 |
2 |
| Mondelphis domestica | Mon dom | gray short-tailed opossum | [GenBank:NW_001581956.1] | 6492289.6491655 | 1 |
aLocation within accession numbered database sequence.
bBase weight was used to determine specific weights for each analysis as described in the main text.