Table 4.
ArrayExpress experiments summary and penalized uniqueness score comparison
| E-GEOD-ID | Array no. | Factor level | Filtered probe no. | Filtered probe mean/median | Filtered probe std. dev. | Normal probe mean/median | t -testp-value |
|---|---|---|---|---|---|---|---|
| 22072 |
5 |
2 |
18 |
9.306/8.798 |
3.235 |
9.131/10.04 |
NA |
| 23131 |
31 |
3 |
61 |
8.735/9.796 |
3.492 |
9.132/10.04 |
NA |
| 23558 |
32 |
2 |
136 |
4.784/3.503 |
4.246 |
9.146/10.05 |
2.2E-16 |
| 23697 |
70 |
2 |
1 |
0/0 |
NA |
9.131/10.04 |
NA |
| 24536 |
52 |
5 |
11 |
7.508/9.957 |
4.973 |
9.132/10.04 |
NA |
| 25623 |
32 |
3 |
1 |
4.655/4.655 |
NA |
9.131/10.04 |
NA |
| 27915 |
20 |
5 |
6 |
9.633/9.899 |
2.824 |
9.131/10.04 |
NA |
| 29288 |
132 |
9 |
9 |
8.641/9.957 |
3.965 |
9.131/10.04 |
NA |
| 32155 |
21 |
7 |
23 |
8.48/9.613 |
3.642 |
9.132/10.04 |
NA |
| 32988 |
48 |
10 |
145 |
6.618/8.636 |
4.383 |
9.14/10.04 |
1.34E-10 |
| 33264 |
49 |
16 |
31 |
9.428/9.957 |
2.76 |
9.131/10.04 |
NA |
| 35635 |
57 |
3 |
1 |
12.79/12.79 |
NA |
9.131/10.04 |
NA |
| 35756 |
32 |
8 |
458 |
4.229/3.396 |
3.876 |
9.187/10.04 |
2.2E-16 |
| 37827 | 87 | 29 | 32 | 9.078/9.701 | 2.837 | 9.131/10.04 | NA |