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A) IsoQuant consists of three major components: Raw file conversion, Peptide/ Protein Quantitation and Visual Validation. B) Interface of the peptide and protein quantitation module. Currently, IsoQuant supports the following quantitation features: 1. double and triple label SILAC experiments; 2. Single or multiple .raw files; and 3. SEQUEST and Mascot peptide identification results (only SEQUEST search result is shown here).
