Table 4. Summary of correlations of gene expression and traits assayed using the panel of 28 BXD strains.
| SCNT |
SCNT:Parthenote |
Parthenotes |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | Chr | 2C/ 1C | 4C/ 2C | BL/ 2C | BL/ 4C | 2C/ 1C | 4C/ 2C | BL/ 2C | BL/ 4C | 2C/ 1C | 4C/ 2C | BL/ 2C | BL/ 4C | MII Expr. RatioB6:D2:F1 |
| Genes in or near significant LRS intervals | ||||||||||||||
| Mfsd9 | 1 | (\) | X | (X) | (X) | (\) | 1:0.71:0.97 | |||||||
| Tmem182 | 1 | (\) | (\) | (X) | (X) | (X) | (X) | 1:0.32:0.49 | ||||||
| Runx1t1 | 4 | (\)* | / | (X) | 1:1.09:1.37 | |||||||||
| Arhgap28 | 17 | (X) | (X) | (X) | (X) | (\) | 1:0.07:0.77 | |||||||
| Epb4.1l3 | 17 | X | X | (X) | (X) | 1:2.6:1.98 | ||||||||
| Dlgap1 | 17 | (\) | /,(\) | (\) | / | 1:0.15:0.61 | ||||||||
| Tgif1 | 17 | (X) | \ | X | (X) | (X) | (X) | 1:1.28:0.92 | ||||||
| Other genes in suggestive LRS intervals | ||||||||||||||
| Phf3 | 1 | (/) | (X) | X | X | 1:0.95:0.99 | ||||||||
| Txndc9 | 1 | (X) | (X) | (X) | X | (X) | (X) | (X) | 1:5.23:3.12 | |||||
| Eif5b | 1 | (X) | (X) | (X) | (\) | (X) | (X) | (X) | 1:1.23:1.25 | |||||
| Aff3 | 1 | (X) | (X) | (\) | 1:1.7:1.7 | |||||||||
| Pdcl3 | 1 | \ | \ | (\) | X | \ | 1:0.69:1.01 | |||||||
| Tbc1d8 | 1 | (X) | 1:1.11:1.08 | |||||||||||
| D1Bwg0212e | 1 | (\) | (X) | X | (X) | (X) | (X) | 1:0.82:0.89 | ||||||
| Car8 | 4 | (X) | (X) | (X) | X | (\) | 1:0.14:0.61 | |||||||
| Rab2a | 4 | / | / | 1:0.87:1.01 | ||||||||||
| Chd7 | 4 | / | / | (X) | (X) | 1:1.09:1.39 | ||||||||
| Asph | 4 | X | X | X | X | (X) | (X) | (\) | 1:1.26:1.35 | |||||
| Ccne2 | 4 | (X) | (X) | X | X | (X) | (X) | (X) | (/) | 1:2.36:1.37 | ||||
| Dpy19l4 | 4 | / | 1:1.15:1.02 | |||||||||||
| Esrp1 | 4 | / | / | / | X | \ | 1:0.86:0.89 | |||||||
| Smchd1 | 17 | / | (X) | (X) | (X) | (\) | (\) | 1:0.91:1.54 | ||||||
| Ndc80 | 17 | X | (X) | (X) | (X) | (X) | X | (X) | 1:0.23:0.57 | |||||
| Ypel5 | 17 | X | X | X | X | 1:1.39:1.26 | ||||||||
| Lclat1 | 17 | (/) | (X) | X | X | (X) | (X) | (X) | (X) | 1:1.51:1.15 | ||||
| Spast | 17 | (X) | (X) | (\) | / | 1:0.69:1.21 | ||||||||
/, significant association with trait with B6, D2 and B6D2F1 data included; \, significant association with trait without B6, D2 and B6D2F1 data included; X, significant association with trait with and without B6, D2, and B6D2F1 data included; ( ), negative correlation of expression with developmental trait; *, marginal significance with parental data included.