Table 5. Summary of polymorphisms between B6 and D2 haplotypes for selected genes.
| Gene | Gene ID | Chr | No. variants | NS SNPs coding region | No. insertions or deletions coding region | No. SNPs 3′-UTR in variants from column 4 | No. insertions or deletions 3′-UTR in variants from column 4 |
|---|---|---|---|---|---|---|---|
| Genes in or near significance intervals | |||||||
| Mfsd9 | 211798 | 1 | 1 | ||||
| Tmem182 | 381339 | 1 | 1 | ||||
| Runx1t1 | 12395 | 4 | 3 | 2, 2, 2 | |||
| Arhgap28 | 268970 | 17 | 1 | 1 | 1 | 28 | 3 |
| Epb4.1l3 | 13823 | 17 | 1 | ||||
| Dlgap1 | 224997 | 17 | 4 | 0, 1, 1, 1 | 4, 1, 4, 1 | ||
| Tgif1 | 21815 | 17 | 5 | 2, 2, 2, 2, 2 | |||
| Other genes in suggestive intervals | |||||||
| Phf3 | 213109 | 1 | 1 | 3 | 1 | 2 | |
| Txndc9 | 98258 | 1 | 1 | 45 | 9 | ||
| Eif5b | 226982 | 1 | 1 | ||||
| Aff3 | 16764 | 1 | 1 | ||||
| Pdcl3 | 68833 | 1 | 1 | 1 | 1 | ||
| Tbc1d8 | 54610 | 1 | 1 | ||||
| D1Bwg0212e | 52846 | 1 | 1 | ||||
| Car8 | 12319 | 4 | 1 | 65 | 9 | ||
| Rab2a | 59021 | 4 | 1 | 1 | |||
| Chd7 | 320790 | 4 | 1 | 1 | 1 | ||
| Asph | 65973 | 4 | 10 | 0, 4, 4, 5, 5, 5, 5, 5, 5, 8 | 2, 0, 2, 1, 1, 1, 1, 0, 1, 1 | ||
| Ccne2 | 12448 | 4 | 2 | 1, 1 | |||
| Dpy19l4 | 381510 | 4 | 1 | ||||
| Esrp1 | 207920 | 4 | 1 | ||||
| Smchd1 | 74355 | 17 | 1 | 1 | 1 | ||
| Ndc80 | 67052 | 17 | 1 | 1 | 2 | ||
| Ypel5 | 383295 | 17 | 1 | 6 | 2 | ||
| Lclat1 | 225010 | 17 | 3 | 3, 3, 3 | |||
| Spast | 50850 | 17 | 2 | 1, 1 | 9, 9 | ||
| Zfp161 | 22666 | 17 | 1 | ||||