Table 5. Distribution of SSRs present in the 30 asterid chloroplast genomes.
Taxon | Genome Size (bp) | AT (%) | SSR type | CDS | ||||||||
Mono | Di | Tri | Tetra | Penta | Hexa | Total | %a | No.b | %c | |||
Ageratina adenophora | 150,698 | 63 | 115 | 35 | 4 | 7 | 0 | 1 | 162 | 49 | 50 | 31 |
Anthriscus cerefolium | 154,719 | 63 | 141 | 62 | 3 | 8 | 2 | 1 | 217 | 50 | 68 | 31 |
Atropa belladonna | 156,687 | 62 | 117 | 46 | 2 | 9 | 0 | 0 | 174 | 51 | 50 | 29 |
Boea hygrometrica | 153,493 | 62 | 98 | 40 | 3 | 8 | 0 | 0 | 149 | 52 | 46 | 31 |
Coffea arabica | 155,189 | 63 | 115 | 46 | 3 | 4 | 0 | 0 | 168 | 51 | 57 | 34 |
Datura stramonium | 155,871 | 62 | 109 | 40 | 3 | 8 | 0 | 0 | 160 | 52 | 53 | 33 |
Daucus carota | 155,911 | 62 | 133 | 56 | 6 | 8 | 2 | 0 | 205 | 50 | 69 | 34 |
Eleutherococcus senticosus | 156,768 | 62 | 109 | 47 | 2 | 7 | 0 | 0 | 165 | 50 | 56 | 34 |
Guizotia abyssinica | 151,762 | 62 | 119 | 42 | 2 | 8 | 0 | 1 | 172 | 52 | 71 | 41 |
Helianthus annuus | 151,104 | 62 | 119 | 33 | 4 | 4 | 0 | 0 | 160 | 51 | 63 | 39 |
Ipomoea purpurea | 162,046 | 63 | 146 | 38 | 5 | 13 | 1 | 1 | 204 | 53 | 67 | 33 |
Jacobaea vulgaris | 150,689 | 63 | 124 | 51 | 8 | 8 | 0 | 0 | 191 | 51 | 55 | 29 |
Jasminum nudiflorum | 165,121 | 62 | 149 | 42 | 8 | 9 | 3 | 3 | 214 | 50 | 81 | 38 |
Lactuca sativa | 152,765 | 62 | 118 | 49 | 3 | 2 | 0 | 0 | 172 | 48 | 43 | 25 |
Nicotiana sylvestris | 155,941 | 62 | 118 | 41 | 5 | 9 | 1 | 0 | 174 | 54 | 62 | 36 |
Nicotiana tabacum | 155,943 | 62 | 118 | 41 | 5 | 9 | 1 | 0 | 174 | 54 | 62 | 36 |
Nicotiana tomentosiformis | 155,745 | 62 | 122 | 43 | 4 | 8 | 1 | 0 | 178 | 54 | 58 | 33 |
Nicotiana undulata | 155,863 | 62 | 119 | 41 | 3 | 10 | 1 | 0 | 174 | 56 | 62 | 36 |
Olea europaea | 155,888 | 62 | 155 | 35 | 0 | 4 | 2 | 0 | 196 | 51 | 50 | 26 |
Olea europaea subsp. cuspidata | 155,862 | 62 | 152 | 36 | 0 | 3 | 2 | 0 | 193 | 51 | 46 | 24 |
Olea europaea subsp. europaea | 155,875 | 62 | 153 | 35 | 0 | 3 | 2 | 0 | 193 | 51 | 46 | 24 |
Olea europaea subsp. maroccana | 155,896 | 62 | 153 | 36 | 0 | 3 | 2 | 0 | 194 | 51 | 46 | 24 |
Olea woodiana subsp. woodiana | 155,942 | 62 | 153 | 36 | 0 | 4 | 2 | 0 | 195 | 51 | 45 | 23 |
Panax ginseng | 156,318 | 62 | 92 | 39 | 3 | 8 | 2 | 1 | 145 | 50 | 54 | 37 |
Salvia miltiorrhiza | 151,328 | 62 | 122 | 35 | 0 | 8 | 0 | 1 | 166 | 52 | 53 | 32 |
Sesamum indicum | 153,324 | 62 | 137 | 38 | 3 | 7 | 0 | 1 | 186 | 51 | 54 | 29 |
Solanum bulbocastanum | 155,371 | 62 | 106 | 37 | 2 | 8 | 1 | 1 | 155 | 51 | 48 | 31 |
Solanum lycopersicum | 155,461 | 62 | 114 | 33 | 1 | 7 | 1 | 0 | 156 | 51 | 46 | 29 |
Solanum tuberosum | 155,296 | 62 | 103 | 36 | 2 | 8 | 1 | 0 | 150 | 51 | 46 | 31 |
Trachelium caeruleum | 162,321 | 62 | 96 | 47 | 5 | 17 | 0 | 1 | 166 | 43 | 44 | 27 |
CDS: protein-coding regions.
Percentage were calculated according to the total length of the CDS divided by the genome size.
Total number of SSRs identified in the CDS.
Percentage were calculated according to the total number of SSRs in the CDS divided by the total number of SSRs in the genome.