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. 2013 Feb 27;8(2):e57607. doi: 10.1371/journal.pone.0057607

Table 5. Distribution of SSRs present in the 30 asterid chloroplast genomes.

Taxon Genome Size (bp) AT (%) SSR type CDS
Mono Di Tri Tetra Penta Hexa Total %a No.b %c
Ageratina adenophora 150,698 63 115 35 4 7 0 1 162 49 50 31
Anthriscus cerefolium 154,719 63 141 62 3 8 2 1 217 50 68 31
Atropa belladonna 156,687 62 117 46 2 9 0 0 174 51 50 29
Boea hygrometrica 153,493 62 98 40 3 8 0 0 149 52 46 31
Coffea arabica 155,189 63 115 46 3 4 0 0 168 51 57 34
Datura stramonium 155,871 62 109 40 3 8 0 0 160 52 53 33
Daucus carota 155,911 62 133 56 6 8 2 0 205 50 69 34
Eleutherococcus senticosus 156,768 62 109 47 2 7 0 0 165 50 56 34
Guizotia abyssinica 151,762 62 119 42 2 8 0 1 172 52 71 41
Helianthus annuus 151,104 62 119 33 4 4 0 0 160 51 63 39
Ipomoea purpurea 162,046 63 146 38 5 13 1 1 204 53 67 33
Jacobaea vulgaris 150,689 63 124 51 8 8 0 0 191 51 55 29
Jasminum nudiflorum 165,121 62 149 42 8 9 3 3 214 50 81 38
Lactuca sativa 152,765 62 118 49 3 2 0 0 172 48 43 25
Nicotiana sylvestris 155,941 62 118 41 5 9 1 0 174 54 62 36
Nicotiana tabacum 155,943 62 118 41 5 9 1 0 174 54 62 36
Nicotiana tomentosiformis 155,745 62 122 43 4 8 1 0 178 54 58 33
Nicotiana undulata 155,863 62 119 41 3 10 1 0 174 56 62 36
Olea europaea 155,888 62 155 35 0 4 2 0 196 51 50 26
Olea europaea subsp. cuspidata 155,862 62 152 36 0 3 2 0 193 51 46 24
Olea europaea subsp. europaea 155,875 62 153 35 0 3 2 0 193 51 46 24
Olea europaea subsp. maroccana 155,896 62 153 36 0 3 2 0 194 51 46 24
Olea woodiana subsp. woodiana 155,942 62 153 36 0 4 2 0 195 51 45 23
Panax ginseng 156,318 62 92 39 3 8 2 1 145 50 54 37
Salvia miltiorrhiza 151,328 62 122 35 0 8 0 1 166 52 53 32
Sesamum indicum 153,324 62 137 38 3 7 0 1 186 51 54 29
Solanum bulbocastanum 155,371 62 106 37 2 8 1 1 155 51 48 31
Solanum lycopersicum 155,461 62 114 33 1 7 1 0 156 51 46 29
Solanum tuberosum 155,296 62 103 36 2 8 1 0 150 51 46 31
Trachelium caeruleum 162,321 62 96 47 5 17 0 1 166 43 44 27

CDS: protein-coding regions.

a

Percentage were calculated according to the total length of the CDS divided by the genome size.

b

Total number of SSRs identified in the CDS.

c

Percentage were calculated according to the total number of SSRs in the CDS divided by the total number of SSRs in the genome.