Table 2. Name, length and phylogenetic signal of ALNs.

ALN name	S	length	%QFR	%QPU	%QFU	ALN name	S	length	%QFR	%QPU	%QFU
atp8	F	186	63.40	13.40	23.20	nad5	I	1,497	95.30	2.70	2.00
atp8 p1-p2	F	124	60.60	6.80	32.60	nad5 p1-p2	I	998	92.30	4.50	3.20
atp8 p1	F	62	39.80	5.50	54.70	nad5 p1	I	499	81.60	7.60	10.80
atp8 p2	F	62	54.00	11.20	34.80	nad5 p2	I	499	85.20	5.10	9.70
atp8 p3	F	62	50.80	18.20	31.00	nad5 p3	I	499	87.80	4.40	7.80
ATP8	F	62	62.70	6.80	30.50	NADH5	I	499	97.40	0.50	2.10
atp6	F	675	90.80	6.40	2.80	rrnL	F	1,400	96.20	2.00	1.80
atp6 p1-p2	F	450	79.10	10.00	10.90	rrnS	F	787	97.00	2.20	0.80
atp6 p1	F	225	67.60	9.90	22.50	trnD	F	78	38.90	10.80	50.30
atp6 p2	F	225	70.10	7.20	22.70	trnH	F	71	57.00	10.00	33.00
atp6 p3	F	225	82.30	5.70	12.00	trnK	F	71	36.00	19.70	44.30
ATP6	F	225	81.60	6.20	12.20	trnL1	F	72	55.10	11.60	33.30
cob	I	558	78.60	12.40	9.00	trnL2	F	68	54.50	5.90	39.60
cob p1-p2	I	372	62.70	13.50	23.80	trnS2	F	71	46.90	6.80	46.30
cob p1	I	186	63.20	11.10	25.70	trnV	F	71	51.10	6.40	42.50
cob p2	I	186	44.00	5.70	50.30	EF-1α	I	999	92.60	3.30	4.10
cob p3	I	186	69.10	7.00	23.90	EF-1α p1-p2	I	666	55.70	2.20	42.10
CYTB	I	186	67.30	6.50	26.2	EF-1α p1	I	333	52.60	4.70	42.70
cox1	I	1,458	93.40	4.40	2.20	EF-1α p2	I	333	0.00	0.00	100.00
cox1 p1-p2	I	972	77.50	12.20	10.30	EF-1α p3	I	333	90.60	4.50	4.90
cox1 p1	I	486	74.20	9.70	16.10	EF-1A	I	333	61.10	8.70	30.20
cox1 p2	I	486	57.10	7.50	35.40	pho	I	651	93.00	0.00	7.00
cox1 p3	I	486	87.30	4.30	8.40	pho p1-p2	I	434	81.50	2.40	16.10
COI	I	486	77.20	8.70	14.10	pho p1	I	217	75.50	0.00	24.50
cox2	F	681	86.30	7.30	6.40	pho p2	I	217	59.40	2.40	38.20
cox2 p1-p2	F	454	63.30	13.20	23.50	pho p3	I	217	86.40	1.20	12.40
cox2 p1	F	227	62.90	12.30	24.80	PHO	I	217	78.50	0.30	21.20
cox2 p2	F	227	56.90	5.60	37.30	wng	I	309	81.50	7.00	11.50
cox2 p3	F	227	82.90	8.00	9.10	wng p1-p2	I	206	54.70	2.50	42.80
COII	F	227	74.90	5.70	19.40	wng p1	I	103	48.00	2.50	49.50
cox3	I	102	52.00	11.20	36.80	wng p2	I	103	26.10	0.00	73.80
cox3 p1-p2	I	68	32.20	17.50	50.30	wng p3	I	103	76.60	6.80	16.60
cox3 p1	I	34	35.50	2.10	62.40	WNG	I	103	32.00	0.00	68.00
cox3 p2	I	34	39.00	21.10	39.60	nuc2	I	1,308	95.90	0.20	3.90
cox3 p3	I	34	42.90	5.40	51.70	nuc2 p1-p2	I	872	67.50	7.70	24.80
COIII	I	34	26.80	10.80	62.40	nuc2 p1	I	436	66.30	4.50	29.20
nad1	F	936	89.20	4.60	6.20	nuc2 p2	I	436	26.10	0.00	73.80
nad1 p1-p2	F	624	79.30	10.20	10.50	nuc2 p3	I	436	92.30	3.60	4.10
nad1 p1	F	312	67.10	9.50	23.40	NUC2	I	436	70.90	2.50	26.60
nad1 p2	F	312	63.00	7.90	29.10	nuc3	I	1,959	96.30	0.10	3.60
nad1 p3	F	312	79.80	6.80	13.40	nuc3 p1-p2	I	1,306	86.30	1.00	12.70
NADH1	F	312	94.60	2.30	3.10	nuc3 p1	I	653	86.40	0.90	12.70
nad4	I	267	63.10	7.40	29.50	nuc3 p2	I	653	70.60	2.40	27.00
nad4 p1-p2	I	178	57.40	9.00	33.60	nuc3 p3	I	653	96.10	0.60	3.30
nad4 p1	I	89	51.80	7.20	41.00	NUC3	I	653	88.80	0.00	11.20
nad4 p2	I	89	41.40	3.60	55.00	mtpcg	I	6,360	99.20	0.20	0.60
nad4 p3	I	89	54.90	9.00	36.10	mtpcg p1-p2	I	4,240	98.90	0.50	0.60
NADH4	I	89	63.40	4.70	31.90	mtpcg p1	I	2,120	97.40	0.80	1.80
7trnas	F	502	78.10	3.70	18.20	mtpcg p2	I	2,120	98.00	1.00	1.00
rrnL+rrnS	F	2,187	97.40	1.20	1.40	mtpcg p3	I	2,120	98.80	0.90	0.30
rrnL+rrnS+7trnas	F	2,689	99.00	1.00	0.40	mtPCG	I	2,120	99.60	0.40	0.00
aag13sp-set	I	10,357	99.60	0.40	0.00	aag11th-set	I	11,008	99.30	0.70	0.00
AAG13SP-SET	I	5,245	99.80	0.10	0.10	AAG11TH-SET	I	5,462	99.40	0.60	0.00

%QFR, percent of quartets fully resolved; %QPU, percent of quartets partly unresolved; %QFU, percent of quartets fully unresolved; F, ALN containing full-length gene/protein sequences; I, ALN containing incomplete gene/protein sequences; p1, p2 and p3, first, second and third positions of codons.