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. 2013 Jan 1;2(1):144–160. doi: 10.1002/mbo3.63

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Copyright © 2013 Published by Blackwell Publishing Ltd.

Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation.

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Sequence-based motif analysis of fas-1, ver-1, mycelial cat1, and Mn sod promoters using MEME. Fas1-a, Ver1-b, Mcat1-a, and Msod promoters fragment and the NorR4 competitor used for competition electrophoretic mobility shift assays were analyzed for conserved motifs using sequence-based MEME motif analysis. A conserved motif (5′-T/GNT/CAAGCCNNG/AA/GC/ANT/C-3′) was found in the promoter regions, where the core consensus sequence was 5′-AAGCC-3′. (A) Sites carrying the core consensus sequence in five promoter fragments. (B) Sequence logo of the core consensus sequence. (C) Sites carrying the conserved motif in five promoter fragments. (D) Sequence logo of the conserved motif.