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. 2013 Jan 29;25(1):38–55. doi: 10.1105/tpc.112.106062

Table 1. Experimentally Characterized IDPs from the LEA Family.

PFAMa Groupb Classc Protein Species Secondary Structures and Transitions Methodsd Reference
PF00477 1 5 Em Wheat (Triticum aestivum) 17% β-Sheet, 13% α-helix; 29% α-helix with TFE CD McCubbin et al. (1985)
p11 Pea (Pisum sativum) Largely unstructured in solution; conformation resistant to heat CD Russouw et al. (1997)
rGmD-19 Soybean (Glycine max) Highly disordered, 6 to 14% poly (l-Pro)-type structure (PII); 30% α-helix with TFE DSC, CD Soulages et al. (2002)
Mt-Em6 M. truncatula 37% α-helix, 10% β-sheet; increase to 60% α-helix upon drying FTIR Boudet et al. (2006)
PF00257 2 1 Dsp16 Craterostigma plantagineum Largely unstructured with some local residual structural elements; TFE promotes its folding NMR Lisse et al. (1996)
4 Cowpea dehydrin Vigna unguiculata Largely unstructured; folded into α-helix with SDS CD Ismail et al. (1999)
3 Cu-COR19 C. unshiu Largely unstructured; α-helix induced by SDS CD Hara et al. (2001)
2(DHNs) Cor47 Arabidopsis thaliana 5% α-Helix, 15% PII; 50% α-helix with TFE CD Mouillon et al. (2006)
4 Lti30 0.3% α-Helix, 14% PII; 30% α-helix with TFE
2 Lti29 0.8% α-Helix, 12% PII; 30% α-helix with TFE
1 Rab18 12% PII; no α-helix induced with TFE
2 1 ERD10 ERD14 Largely unstructured; α-helix induced by TFE, no structural changes binding to lipid vesicles NMR and CD Kovacs et al. (2008)
1 K2 Vitis riparia Highly disordered in the middle Φ-region, transient α-helices in K-regions at both ends NMR Hughes and Graether (2011)
1 DHN1 Maize Largely unstructured; 9.5% α-helix induced by lipid vesicles or SDS CD Koag et al. (2003)
4 Gm-DHN1 Soybean 27% PII at 12°C, 15% PII at 80°C; TFE and SDS induce only moderate α-helix DSC and CD Soulages et al. (2003)
2 Ts-DHN-1 Ts-DHN-2 T. salsuginea Both largely unstructured; 31% β-sheet, 18% α-helix for TsDHN-1, and 24% β-sheet, 28% α-helix for TsDHN-2 with lipid vesicles FTIR and CD Rahman et al. (2010)
PF02987 3 6 D-7 Typha latifolia Largely unstructured; 24% β-sheet, 51% α-helix upon fast drying, 45% β-sheet, 40% α-helix upon slow drying FTIR Wolkers et al. (2001)
6 COR15A COR15B Arabidopsis Both highly disordered; 65% α-helix (COR15A) and 57% α-helix (COR15B) in the dry state CD Thalhammet al. (2010)
6 LEA7 Arabidopsis Largely unstructured in solution; 15% β-sheet, 27% α-helix in dry state, α-helix is promoted with lipid vesicles FTIR and CD Popova et al. (2011)
6 LEAM Pea Largely unstructured in solution; 50% α-helix with SDS, 70% α-helix with TFE or in dry state FTIR and CD Tolleter et al. (2007)
PF03760 4 10 Gm-PM16 Soybean 25% α-helix; 90% α-helix with SDS, TFE or upon drying FTIR and CD Shih et al. (2004)
10 LEA18 Arabidopsis Largely unstructured; 35% β-sheet, 20% α-helix with negatively charged lipid vesicles CD Hundertmark et al. (2011)
PF04927 5 11 Mt-PM25 M. truncatula Mostly unstructured in solution; increase to 56% α-helix and 25% β-sheet upon drying FTIR and CD Boudet et al. (2006); Boucher et al. (2010)
PF03242 5 9 Lj-IDP1 Lotus japonicas Largely unstructured in solution; 40% α-helix, 15% β-sheet induced by TFE or upon drying CD, NMR, and FTIR Haaning et al. (2008)

This is a major but not exhaustive list for the experimentally characterized IDPs of LEA family.

a

Protein family (Pfam) ID.

b

Former LEA protein groups.

c

New classification according to Jaspard et al. (2012).

d

Circular dichroism (CD), differential scanning calorimetry (DSC), Fourier transform infrared spectroscopy (FTIR), and nuclear magnetic resonance (NMR).