Table 2.

Comparison of average TermAUC of two different prediction algorithms

Data sources	122 MF terms		546 BP terms
	kNN	lin-sim kNN	kNN	lin-sim kNN
Sequence Similarity	0.671	0.688	0.557	0.558
Microarray	0.555	0.561	0.563	0.578
PPI	0.574	0.592	0.580	0.611