Table 5.

Comparison of AUCs of different methods

Data Source	122 MF terms	546 BP terms
	TermAUC	TermAUC
kNN: Sequence similarity	0.819	0.707
kNN: PPI	0.574	0.580
kNN: Microarray	0.635	0.642
MS-kNN	0.848	0.763
MS-W-kNN	0.829	0.758
MS-CW-kNN: root level	0.831	0.715
MS-CW-kNN: first level	0.851	0.702