Table 5.
Benchmark of global model quality
| Single-model methods | R | Rtarget | ∑GDT1 | |
|---|---|---|---|---|
|
ProQ2 |
0.80/0.80 |
0.72/0.69 |
75.2/47.0 |
100.4/68.6 |
| QMEAN |
0.75/0.77 |
0.71/0.66 |
73.6/44.7 |
81.1/52.1 |
| MetaMQAP |
–/0.76 |
–/0.59 |
–/43.1 |
–/40.3 |
| ConQuass |
–/0.73 |
–/0.66 |
–/40.4 |
–/20.4 |
| Distill_NNPIF |
–/0.71 |
–/0.64 |
–/43.9 |
–/43.5 |
| MULTICOM-CMFR |
0.71/– |
0.68/– |
74.0/– |
83.7/– |
| ProQ |
0.67/0.68 |
0.65/0.54 |
71.5/42.3 |
59.3/40.0 |
|
Consensus methods | ||||
| QMEANclust |
0.89/0.96 |
0.94/0.91 |
75.8/48.6 |
104.1/81.41 |
| MULTICOM-CLUSTER |
0.96 |
0.91 |
48.7 |
82.3 |
| Mufold |
0.96 |
0.91 |
48.7 |
82.5 |
|
ProQ2+Pcons |
0.89/0.95 |
0.94/0.89 |
76.9/48.7 |
118.5/81.6 |
| Pcons |
0.89/0.95 |
0.95/0.91 |
75.9/48.3 |
101.6/76.8 |
| PconsM |
0.95 |
0.90 |
47.9 |
70.2 |
| United3D |
0.95 |
0.92 |
48.8 |
81.2 |
| MUFOLD-QA |
0.95 |
0.92 |
48.3 |
79.5 |
| ModFOLDclust2 |
0.95 |
0.90 |
48.4 |
80.6 |
| MetaMQAPclust |
0.95 |
0.91 |
48.4 |
78.2 |
| IntFOLD-QA |
0.95 |
0.90 |
48.4 |
79.9 |
| MULTICOM-REFINE |
0.94 |
0.88 |
46.2 |
66.6 |
| MULTICOM |
0.94 |
0.88 |
48.7 |
84.7 |
| MQAPmulti |
0.94 |
0.91 |
48.2 |
75.4 |
| ModFOLDclustQ |
0.94 |
0.87 |
48.6 |
82.3 |
| MQAPsingle |
0.92 |
0.81 |
45.3 |
45.2 |
| MULTICOM-CONSTRUCT |
0.90 |
0.82 |
46.6 |
63.3 |
| gws |
0.90 |
0.81 |
45.3 |
44.2 |
| Splicer |
0.89 |
0.85 |
47.6 |
75.4 |
| LEE |
0.89 |
0.80 |
45.1 |
42.9 |
| Splicer_QA |
0.88 |
0.84 |
47.8 |
77.4 |
| Modcheck-J2 |
0.87 |
0.77 |
41.7 |
26.2 |
| MUFOLD-WQA |
0.86 |
0.91 |
49.0 |
83.9 |
| SMEG-CCP |
0.83 |
0.76 |
47.9 |
74.9 |
| QMEANdist |
0.80 |
0.84 |
47.8 |
77.1 |
| QMEANfamily |
0.75 |
0.68 |
44.8 |
50.3 |
| GRIER-CONSENSUS |
0.68 |
0.86 |
48.3 |
82.0 |
| Baltymus |
0.58 |
0.53 |
41.8 |
32.8 |
| Best Possible | 1.00/1.00 | 1.00/1.00 | 82.3/52.2 | 182.2/127.9 |
Benchmark of global model quality on CASP8 and CASP9 data sets. R is overall correlation, Rtarget the average correlation per target, ∑GDT1 is the the sum of the first-ranked models for each target and ∑ZGDT1 is the summed Z-score for the first-ranked models for each target. The first value corresponds to results on CASP8, the second to CASP9, and cells with only one value are CASP9 only.