Table 1. Genome sequencing statistics for plant-associated Clavicipitaceae.a .
Species | Strain | Genome assembly size (Mb)b | x-cov | Ctg no. | Ctg N50 | PE & MP frag. (kb) | Sc no. | Sc N50 | N50 Sc no. |
Aciculosporium take | MAFF-241224 | 58.7 | 32.4 | 2890 | 40 562 | none | n/a | n/a | n/a |
Claviceps fusiformis | SD58 | 52.3 | 34.9 | 6178 | 20 136 | none | n/a | n/a | n/a |
Claviceps paspali | RRC–1481 | 28.9 | 54.4 | 2152 | 26 979 | none | n/a | n/a | n/a |
Claviceps purpurea | 20.1 | 32.1 | 39.0 | 1878 | 44 165 | 3.2 | 186 | 433 700 | 26 |
Epichloë amarillans | E57 | 38.0 | 27.7 | 1871 | 49 298 | none | n/a | n/a | n/a |
Epichloë brachyelytri | E4804 | 44.1 | 24.6 | 4542 | 20 998 | none | n/a | n/a | n/a |
Epichloë elymi | E56 | 31.8 | 25.6 | 5206 | 32 484 | 0.6 | 2117 | 39 522 | 202 |
Epichloë festucae | E2368 | 34.7 | 27.8 | 1316 | 87 544 | 3.8 | 813 | 163 634 | 58 |
Epichloë festucae | Fl1 | 34.9 | 52.3 | 1277 | 84 986 | 2.0, 36.1 | 170 | 436 939 | 24 |
Epichloë glyceriae | E277 | 49.3 | 27.7 | 2658 | 42 649 | none | n/a | n/a | n/a |
Epichloë typhina | E8 | 41.3 | 21.2 | 2253 | 42 567 | none | n/a | n/a | n/a |
Epichloë typhina | E5819 | 34.0 | 28.6 | 2072 | 36 475 | none | n/a | n/a | n/a |
Neotyphodium gansuense | E7080 | 39.5 | 41.5 | 1307 | 56 237 | none | n/a | n/a | n/a |
N. gansuense var. inebrians | E818 | 29.2 | 53.0 | 3302 | 22 140 | none | n/a | n/a | n/a |
Periglandula ipomoeae | IasaF13 | 35.3 | 19.8 | 869 | 66 619 | none | n/a | n/a | n/a |
Abbreviations: Ctg = contig; PE = paired end; MP = mate pair; Sc = scaffold (i.e., supercontig); x-cov. = fold coverage of sequence. N50 is defined as the minimum length of the largest contigs or scaffolds (as specified) that together contain 50% of the genome assembly.
Size based on total scaffold length for C. purpurea 20.1, E. festucae E2368, and E. festucae Fl1, and total length of large (≥500 bp) contigs for the others.