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. 2013 Feb 28;9(2):e1003323. doi: 10.1371/journal.pgen.1003323

Table 1. Genome sequencing statistics for plant-associated Clavicipitaceae.a .

Species Strain Genome assembly size (Mb)b x-cov Ctg no. Ctg N50 PE & MP frag. (kb) Sc no. Sc N50 N50 Sc no.
Aciculosporium take MAFF-241224 58.7 32.4 2890 40 562 none n/a n/a n/a
Claviceps fusiformis SD58 52.3 34.9 6178 20 136 none n/a n/a n/a
Claviceps paspali RRC–1481 28.9 54.4 2152 26 979 none n/a n/a n/a
Claviceps purpurea 20.1 32.1 39.0 1878 44 165 3.2 186 433 700 26
Epichloë amarillans E57 38.0 27.7 1871 49 298 none n/a n/a n/a
Epichloë brachyelytri E4804 44.1 24.6 4542 20 998 none n/a n/a n/a
Epichloë elymi E56 31.8 25.6 5206 32 484 0.6 2117 39 522 202
Epichloë festucae E2368 34.7 27.8 1316 87 544 3.8 813 163 634 58
Epichloë festucae Fl1 34.9 52.3 1277 84 986 2.0, 36.1 170 436 939 24
Epichloë glyceriae E277 49.3 27.7 2658 42 649 none n/a n/a n/a
Epichloë typhina E8 41.3 21.2 2253 42 567 none n/a n/a n/a
Epichloë typhina E5819 34.0 28.6 2072 36 475 none n/a n/a n/a
Neotyphodium gansuense E7080 39.5 41.5 1307 56 237 none n/a n/a n/a
N. gansuense var. inebrians E818 29.2 53.0 3302 22 140 none n/a n/a n/a
Periglandula ipomoeae IasaF13 35.3 19.8 869 66 619 none n/a n/a n/a
a

Abbreviations: Ctg = contig; PE = paired end; MP = mate pair; Sc = scaffold (i.e., supercontig); x-cov. = fold coverage of sequence. N50 is defined as the minimum length of the largest contigs or scaffolds (as specified) that together contain 50% of the genome assembly.

b

Size based on total scaffold length for C. purpurea 20.1, E. festucae E2368, and E. festucae Fl1, and total length of large (≥500 bp) contigs for the others.