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. 2013 Feb 28;9(2):e1002913. doi: 10.1371/journal.pcbi.1002913

Figure 5. One-dimensional bias on tilt angle, piston shift and rotation angle.

Figure 5

In the metadynamics simulations the biasing potential was applied to (A) Intermonomer tilt angle Inline graphic (B) rotation angle Inline graphic (C) piston shift Inline graphic. For each simulation the free energy evolution is given in panels A0,B0,C0, with the reweighted free energy profiles in (A1,B1,C1) Inline graphic versus Inline graphic; (A2,B2,C2) Inline graphic versus Inline graphic; (A3,B3,C3) Inline graphic versus Inline graphic; (A4,B4,C4) Inline graphic versus Inline graphic; (A5,B5,C5) Inline graphic versus Inline graphic; (A6,B6,C6) Inline graphic versus Inline graphic. Stars indicate the CV on which the bias was applied. Labels indicate stable states. Contour lines are rendered every Inline graphic. The metadynamics simulations show that biasing the piston shift reveals an additional conformational state and that the piston and tilt motions are correlated.