Table 1.
Distribution of repeat classes in different ranges of genome size
| Range (kb) | Geno. No.1 |
Mono- |
Di- |
Tri- |
Tetra- |
Penta- |
Hexa- |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G .N. R.2 | %3 | O. V.4 | G .N. R. | % | O. V. | G .N. R. | % | O. V. | G .N. R. | % | O. V. | G .N. R. | % | O. V. | G .N. R. | % | O. V. | ||
| ~ 2 |
2 |
2 |
100 |
10 |
2 |
100 |
7 |
2 |
100 |
3 |
1 |
50 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
| 2 ~ 5 |
32 |
29 |
90.6 |
162 |
32 |
100 |
268 |
28 |
87.5 |
81 |
2 |
6.3 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5 ~ 10 |
94 |
94 |
100 |
851 |
94 |
100 |
1585 |
90 |
95.7 |
363 |
9 |
9.6 |
11 |
1 |
1.1 |
1 |
1 |
1.1 |
1 |
| 10 ~ 30 |
78 |
78 |
100 |
1482 |
78 |
100 |
2822 |
77 |
98.7 |
626 |
15 |
19.2 |
17 |
2 |
2.6 |
4 |
2 |
2.6 |
2 |
| 30 ~ 100 |
15 |
15 |
100 |
1020 |
15 |
100 |
1183 |
15 |
100 |
342 |
4 |
26.7 |
5 |
2 |
13.3 |
3 |
1 |
6.7 |
1 |
| 100 ~ 410 | 36 | 36 | 100 | 16009 | 36 | 100 | 19587 | 36 | 100 | 5440 | 34 | 94.4 | 236 | 19 | 52.8 | 40 | 23 | 63.9 | 121 |
1 Genome number, e.g., the number of genomes is 32 with the size of 2 ~ 5 kb; 2 Genome number with corresponding repeat class, e. g., there are 29 virus genomes from which mononucleotide SSRs were extracted in the genome range of 2 ~ 5 kb; 3 Ratio of G. N. R. to Geno. No.; 4 Observed value of corresponding SSRs, e. g., a total of 162 mononucleotide repeat motifs were extracted from the genome range of 2 ~ 5 kb.