Table 3.
Transcriptional regulatory features | PromoSer [20] | PromH [49] | DragonGSF [13] | McPromoter [16] | GPMiner |
---|---|---|---|---|---|
Species supported | Human, mouse, and rat | Human and mouse | Mammalian | Eukaryote | Human, mouse, rat, chimp, and dog |
Promoter identification | Yes | Yes | Yes | Yes | Yes |
Map to known gene promoters | Yes | - | - | - | DBTSS, EPD and Ensembl |
Transcription factor binding site | - | Yes | Yes | - | TRANSFAC public release and JASPAR, MATCH |
TATA-box | - | Yes | - | Yes | Yes |
Tandem repeat | Yes | - | - | Yes | Tandem Repeat Finder |
CpG island | - | - | Yes | - | CpGProD |
Over-represented pattern | - | - | - | - | Yes |
DNA stability | - | - | - | - | Yes |
GC content | - | - | Yes | - | Yes |
Co-occurrence of TFBSs | - | Yes | - | - | Yes |
Graphical view | Yes | - | - | Yes | Yes |