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. Author manuscript; available in PMC: 2013 Mar 5.
Published in final edited form as: Pac Symp Biocomput. 2013:385–396.

Table 2.

RJ filtering parameter settings

Parameter EV analysis SNP analysis
Bootstrap Sample Size 11250 684342
Number of Trees 4000 4032
Tree Type Regression trees Regression trees
Importance Score Permutation-based Permutation-based
Backward Elimination Discard negative scores Discard negative scores
Number of Processors 4 (500 trees/processor) 64 (63 trees/processor)
Compute Time (hours) 0.6 52
Remaining Variables 1447 209346