Table 2.
RJ filtering parameter settings
Parameter | EV analysis | SNP analysis |
---|---|---|
Bootstrap Sample Size | 11250 | 684342 |
Number of Trees | 4000 | 4032 |
Tree Type | Regression trees | Regression trees |
Importance Score | Permutation-based | Permutation-based |
Backward Elimination | Discard negative scores | Discard negative scores |
Number of Processors | 4 (500 trees/processor) | 64 (63 trees/processor) |
Compute Time (hours) | 0.6 | 52 |
Remaining Variables | 1447 | 209346 |