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. 2013 Mar 5;8(3):e58173. doi: 10.1371/journal.pone.0058173

Table 4. The 30 simulated bi-aa sequences of highest (Pos) and lowest (Neg) prediction scores with T3_MM and BPBAac.

T3_MM_Pos T3_MM_Neg BPBAac_Pos BPBAac_Neg
(PP)50 a (PW|WP)50 (SS)50 (VV)50
(NS|SN)50 b (HY|YH)50 (PS)50 (VD)50
(SS)50 (DW|WD)50 (TS)50 (VY)50
(NI|IN)50 (RC|CR)50 (QS)50 (VI)50
(IC|CI)50 (RW|WR)50 (RS)50 (VG)50
(TT)50 (GC|CG)50 (SP)50 (VF)50
(ST|TS)50 (YY)50 (NS)50 (FV)50
(DH|HD)50 (WY|YW)50 (ST)50 (VK)50
(MY|YM)50 (WK|KW)50 (ES)50 (VM)50
(CL|LC)50 (TC|CT)50 (GS)50 (FD)50
(NH|HN)50 (WI|IW)50 (IS)50 (KV)50
(NN)50 (HW|WH)50 (SN)50 (VW)50
(QT|TQ)50 (WA|AW)50 (SR)50 (FG)50
(AP|PA)50 (WF|FW)50 (SQ)50 (VC)50
(NT|TN)50 (DY|YD)50 (DS)50 (KD)50
(PS|SP)50 (LW|WL)50 (LS)50 (VE)50
(PT|TP)50 (KC|CK)50 (SE)50 (KY)50
(IQ|QI)50 (MV|VM)50 (AS)50 (FI)50
(HK|KH)50 (MC|CM)50 (KS)50 (FY)50
(KF|FK)50 (CA|AC)50 (SG)50 (KI)50
(HM|MH)50 (DC|CD)50 (SA)50 (YV)50
(QS|SQ)50 (VI|IV)50 (SL)50 (KG)50
(AS|SA)50 (VY|YV)50 (VS)50 (FF)50
(HH)50 (TW|WT)50 (SK)50 (KF)50
(CN|NC)50 (QC|CQ)50 (SV)50 (FK)50
(VN|NV)50 (YF|FY)50 (SD)50 (VL)50
(ME|EM)50 (GM|MG)50 (SI)50 (YD)50
(KK)50 (CC)50 (HS)50 (YG)50
(KM|MK)50 (MA|AM)50 (PP)50 (KK)50
(QH|HQ)50 (VV)50 (SH)50 (GY)50

Note: a. (bi-residue)50 means a 100-residue sequence with 50-time repeats of the indicated bi-residue. b. The character ‘|’ means ‘or’. The higher R value for T3_MM or SVM score for BPBAac, the more possibly being T3S effectors; vice versa.