Table 1.
Data Set Overview: Genomes and Selected Features of 30 Arthropod Species
| Species | Genome Version | Source | Abbreviation | Genes | Missing Genes | SSOGs Standard | SSOGs Refined | Distance to MRCA |
|---|---|---|---|---|---|---|---|---|
| Aedes aegypti | L1.2 | [V] | Aaeg | 17,399 | 1,161 | 1,105 | 52 | |
| Atta cephalotes | 1.2 | [H] | Acep | 18,093 | 989 | 2,074 | 1,970 | 10 |
| Acyrthosiphon pisum | 1 | [A] | Acyp | 34,821 | 12,522 | 12,151 | 280 | |
| Acromyrmex echinatior | 2.0/3.8 | [H] | Aech | 17,278 | 1,253 | 2,730 | 2,644 | 10 |
| Anopheles gambiae | P3.6 | [V] | Agam | 14,324 | 840 | 769 | 150 | |
| Apis mellifera | 2 | [H] | Amel | 11,062 | 223 | 431 | 289 | 140 |
| Bombyx mori | 2 | [S] | Bmor | 14,623 | 2,866 | 2,701 | 285 | |
| Camponotus floridanus | 3.3 | [H] | Cflo | 17,064 | 676 | 1,896 | 1,761 | 115 |
| Culex quinquefasciatus | J1.2 | [V] | Cqui | 18,882 | 902 | 821 | 52 | |
| Drosophila ananassae | 1.3 | [F] | Dana | 15,070 | 944 | 810 | 12 | |
| D. erecta | 1.3 | [F] | Dere | 15,048 | 666 | 558 | 4 | |
| D. grimshawi | 1.3 | [F] | Dgri | 14,986 | 811 | 702 | 32 | |
| D. melanogaster | 5.37 | [F] | Dmel | 13,914 | 318 | 230 | 4 | |
| D. mojavensis | 1.3 | [F] | Dmoj | 14,595 | 1,118 | 948 | 24 | |
| D. persimilis | 1.3 | [F] | Dper | 16,878 | 878 | 755 | 1 | |
| D. pseudoobscura | 1.3 | [F] | Dpse | 16,029 | 567 | 464 | 1 | |
| D. pulex | 1.1 | [J] | Dpul | 30,907 | 13,709 | 13,181 | 470 | |
| D. sechellia | 1.3 | [F] | Dsec | 16,471 | 645 | 527 | 1 | |
| D. simulans | 1.3 | [F] | Dsim | 15,415 | 637 | 522 | 1 | |
| D. virulans | 1.2 | [F] | Dvir | 14,491 | 792 | 680 | 24 | |
| D. willistoni | 1.3 | [F] | Dwil | 15,513 | 1,230 | 1,105 | 36 | |
| D. yakuba | 1.3 | [F] | Dyak | 16,082 | 959 | 829 | 4 | |
| Harpegnathos saltator | 3.3 | [H] | Hsal | 18,564 | 622 | 1,919 | 1,391 | 125 |
| Ixodes scapularis | W1.1 | [V] | Isca | 20,486 | 7,007 | 6,677 | 550 | |
| Linepithema humile | 1.2 | [H] | Lhum | 16,116 | 678 | 1,448 | 1,349 | 120 |
| Nasonia vitripennis | 1.2 | [H] | Nvit | 18,822 | 150 | 2,305 | 2,191 | 150 |
| Pogonomyrmex barbatus | 1.2 | [H] | Pbar | 17,189 | 729 | 2,173 | 2,054 | 105 |
| Pediculus humanus | U1.2 | [V] | Phum | 10,774 | 1,176 | 1,096 | 280 | |
| Solenopsis invicta | 2.2.3 | [H] | Sinv | 16,522 | 1,049 | 926 | 885 | 60 |
| Tribolium castaneum | 3 | [B] | Tcas | 16,645 | 3,757 | 3,623 | 300 |
Note.—For each genome, the species name, genome version, and download source are given. A: AphidBase (Legeai et al. 2010); B: BeetleBase (Kim et al. 2010); F: FlyBase (McQuilton et al. 2012); H: Hymenoptera Genome Database (Munoz-Torres et al. 2011); J: DOE Joint Genome Institute (http://www.jgi.doe.gov/); S: SilkDB (Duan et al. 2010); V: VectorBase (Lawson et al. 2009). Abbreviation: Four-letter species abbreviation used throughout this manuscript; Genes: Number of protein-coding genes in the OGS (i.e., excluding possibly missing genes); SSOGs: derived with standard methods (Standard) or comprehensive filtering (Refined); Distance to the MRCA: Evolutionary distance (Myr) to the MRCA node in the phylogenetic tree of these 30 arthropods.