Table 3. llele frequency distribution by sex and age group for three SNPs in TSPAN18.
Case | Control | ||||||
Group | SNP | A1/A2† | n | Freq. § | n | Freq. § | P* |
Male | |||||||
rs11038167 | A/C | 554/838 | 0.40 | 429/713 | 0.38 | 0.2725 | |
rs11038172 | A/G | 613/769 | 0.44 | 467/673 | 0.41 | 0.09324 | |
rs835784 | A/G | 420/968 | 0.30 | 293/849 | 0.26 | 0.01374 | |
Female | |||||||
rs11038167 | A/C | 323/469 | 0.41 | 377/521 | 0.42 | 0.6192 | |
rs11038172 | A/G | 352/438 | 0.45 | 395/485 | 0.45 | 0.893 | |
rs835784 | A/G | 247/545 | 0.31 | 250/648 | 0.28 | 0.1251 | |
Younger (−29) | |||||||
rs11038167 | A/C | 53/99 | 0.35 | 91/99 | 0.48 | 0.02013 | |
rs11038172 | A/G | 58/94 | 0.38 | 97/93 | 0.51 | 0.02125 | |
rs835784 | A/G | 39/113 | 0.26 | 61/129 | 0.32 | 0.2074 | |
Middle-aged (30–59) | |||||||
rs11038167 | A/C | 678/1044 | 0.39 | 657/1041 | 0.39 | 0.6924 | |
rs11038172 | A/G | 756/960 | 0.44 | 703/977 | 0.42 | 0.1983 | |
rs835784 | A/G | 523/1201 | 0.30 | 438/1262 | 0.26 | 0.00339 | |
Elderly (60-) | |||||||
rs11038167 | A/C | 146/164 | 0.47 | 58/94 | 0.38 | 0.07142 | |
rs11038172 | A/G | 151/153 | 0.50 | 62/88 | 0.41 | 0.09996 | |
rs835784 | A/G | 105/199 | 0.35 | 44/106 | 0.29 | 0.2691 |
A1/A2, indicates minor allele/major allele.
The minor allele frequency.
Cochran-Armitage trend test p-values for minor allele.