Table 1.
Main features and RubisCO-associated cluster present in the analyzed fosmids
| Fosmid | Length (bp) | %GC content | Coverage (×) | RubisCO-associated genes and characteristicsa |
|---|---|---|---|---|
| DX-8J-22 | 32,275 | 58.37 | 37 | CbbR: A. ferrooxidans ATCC 23270, 99%; CbbL: A. ferrooxidans ATCC 23270, 100%; CbbS: A. ferrooxidans ATCC 23270, 100%; CsoS2: A. ferrooxidans ATCC 53993, 99%; CsoS3: A. ferrooxidans ATCC 23270, 100%; CscA: A. ferrooxidans ATCC 23270, 100%; CscB: A. ferrooxidans ATCC 23270, 100%; CscD: A. ferrooxidans ATCC 23270, 98%; CscE: A. ferrooxidans ATCC 23270, 100%; CbbQ: A. ferrooxidans ATCC 23270, 100%; CbbO: A. ferrooxidans ATCC 23270, 100% |
| DX-4H-17 | 37,399 | 64.53 | 32 | CbbR: Beggiatoa sp. PS, 53%; CbbL: Acidithiomicrobium sp. P2, 90%; CbbS: A. ferrivorans SS3, 69%; CsoS2: H. neapolitanus c2, 45%; CsoS3: H. neapolitanus c2, 58%; CscA: T. denitrificans ATCC 25259, 86%; CscB: A. ferrivorans SS3, 74%; CscE: A. caldus ATCC 51756, 95%; CscD: A. ferrivorans SS3, 88%; CbbO: A. caldus ATCC 51756, 64% |
| DX-4K-26 | 31,477 | 61.01 | 38 | CbbR: A. ferrivorans SS3, 78%; CbbL: A. ferrivorans SS3, 93%; CbbS: A. ferrivorans SS3, 90%; CsoS2: A. ferrivorans SS3, 56%; CsoS3: A. ferrivorans SS3, 57% |
| DX-1A-14 | 32,546 | 64.00 | 36 | CbbR: Beggiatoa sp. PS, 53%; CbbL: Acidithiomicrobium sp. P2, 90%; CbbS: A. ferrivorans SS3, 69%; CsoS2: H. neapolitanus c2, 45%; CsoS3: H. neapolitanus c2, 58% |
| DX-3D-09 | 32,174 | 66.73 | 37 | CbbM: L. cholodnii SP-6, 90%; CbbQ: L. cholodnii SP-6, 82%; CbbO: L. cholodnii SP-6, 69%; CbbL: A. ferrooxidans, 92%; CbbS: T. denitrificans ATCC 25259, 89%; CbbQ: C. metallidurans CH34, 91%; CbbO: T. denitrificans ATCC 25259, 80% |
| DX-7F-24 | 40,978 | 65.85 | 30 | CbbM: L. cholodnii SP-6, 90%; CbbQ: L. cholodnii SP-6, 83%; CbbO: L. cholodnii SP-6, 70% |
a
Subunit present, closest strain hit, and percent similarity are shown.