Table 5.
Number of variants predicted to be functional (threshold set at 10% FPR) by our model
| Genome | Coding | Promoter | Intron |
|---|---|---|---|
| Watson size | 2533 | 11 426 | 121 624 |
| Watson predicted | 152 | 435 | 183 |
| Watson (%) | 6.00 | 3.81 | 0.15 |
| Venter size | 8045 | 38 032 | 457 316 |
| Venter predicted | 356 | 1265 | 557 |
| Venter (%) | 4.43 | 3.33 | 0.12 |
| Chinese size | 8383 | 36 474 | 333 016 |
| Chinese predicted | 379 | 1346 | 441 |
| Chinese (%) | 4.52 | 3.69 | 0.10 |
| Korean size | 7574 | 33 121 | 391 595 |
| Korean predicted | 359 | 1224 | 411 |
| Korean (%) | 4.74 | 3.7 | 0.10 |
The labels Watson, Venter, Chinese and Korean are referring to the different human genomes used for this table. Size refers to the number of variants within the different regions of the genome. Predicted shows the number of variants predicted by SInBaD to be functional, which are above the threshold set for 10% FPR.