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. 2012 Nov 10;41(1):63–75. doi: 10.1093/nar/gks1029

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© The Author(s) 2012. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

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Figure 8. — Comparison of (a,b) bead CPs, (c,d) mean inter-bead distances and (e,f) standard deviation of inter-bead distance determined from optimal recovered ensemble to respective quantities determined from reference ensemble for a chain with 45 beads and (a,c,e) 4 free loops or (b,d,f) 4 tied loops. Each point represents one of the possible bead pairs in the chain. The dashed lines are plots of y = x, not linear fits. Distances are in units of . Better correlations were observed for test systems with three and two loops (data not shown).

Inline graphic — Comparison of (a,b) bead CPs, (c,d) mean inter-bead distances and (e,f) standard deviation of inter-bead distance determined from optimal recovered ensemble to respective quantities determined from reference ensemble for a chain with 45 beads and (a,c,e) 4 free loops or (b,d,f) 4 tied loops. Each point represents one of the possible bead pairs in the chain. The dashed lines are plots of y = x, not linear fits. Distances are in units of . Better correlations were observed for test systems with three and two loops (data not shown).