Table 2. Sequence Similarity Between Human miR-195 and HIV Envelope Genes.
Gene Name/Description | Accession #/Subtype/Country of Origin | Alignment - Top line is hsa-miR195 (MI0000489) mature sequence, and bottom line is the env region of the respective virus. | Number and Percentage of Nucleotide Matches | SeedMatches | |
HIV-1 Isolate | GU216763 | 1 tagcagcacagaaatatt 18 | 18/18 | 6/6 | |
#169b1a12 | Subtype C | |||||||||||||||||| | (100%) | 100% | |
Envelope gene | South Africa | 1401 tagcagcacagaaatatt 1418 | |||
HIV-1 Isolate | GU216768 | 1 tagcagcacagaaatatt 18 | 17/18 | 5/6 | |
#169b1c4 | Subtype C | |||| ||||||||||||| | (94%) | 83% | |
Envelope gene | South Africa | 1404 tagcggcacagaaatatt 1421 | |||
HIV-1 Isolate | GU216773 | 1 tagcagcacagaaatatt 18 | 17/18 | 5/6 | |
#169b1d7 | Subtype C | |||| ||||||||||||| | (94%) | 83% | |
Envelope gene | South Africa | 1392 tagcggcacagaaatatt 1409 | |||
HIV-1 Isolate | HM215313 | 1 tagcagcacagaaatatt 18 | 17/18 | 5/6 | |
#401-F1_8_10 | Subtype CD | ||||| |||||||||||| | 94% | 83% | |
Envelope gene | Tanzania | 1362 tagcaccacagaaatatt 137 | |||
HIV-1 Isolate | DQ199139 | 1 tagcagcacagaaatatt 18 | 17/18 | 6/6 | |
#TZB0573 | Subtype C | |||||||||||||| ||| | 94% | 100% | |
Envelope gene | Tanzania | 585 tagcagcacagaaacatt 602 |
HIV-1 isolate #169b1a12, #169b1c4, and #169b1d7 are from the same patient.