Table 1. Primer and probe sequences used for (q)MSP analysis.
Gene | Primer and probe sequences (5′−3′) |
Amplicon (bp) |
Annealing (°C) |
---|---|---|---|
hsa-miR-149 |
F: GTCGTGCGTTTAGTTTGTAGCG R: CGACCTAAAAACCCCCGAC P: CAAAACGAACGAAAACCTAAAAACCTCGAACA |
111 |
59 58 68 |
hsa-miR-203 |
F: GTCGGTTTTCGGGATTCGTA R: CGATTCGCCGAACTACGAAA P: AACCGCCCGCGTC-Xsprobe |
78 |
59 60 70 |
hsa-miR-210 |
F: GTCGGGTTGGGTAGGCG R: CACTACCGAATAAACGAACGAAAAAA |
90 |
59 61 |
hsa-miR-375 |
F: GGGGCGTTGTGTAGTATTGAGTTC R: GAAACGAAAACGAAAAACCCG P: AAACCTAACGATCGCCCTCGATAATCTCCTAATC |
91 |
60 60 70 |
hsa-miR-572 |
F: TCGGTTTATTTTTTAGTTTCGTAGTGC R: CACGACCTCGACACCTCCTAA |
111 |
59 59 |
hsa-miR-638 |
F: TCGGTTAGAGTTGTTATTTGGATTTG R: CCGACCCACGAAATTCTCC |
96 |
59 59 |
ACTB | F: TGGTGATGGAGGAGGTTTAGTAAGT R: AACCAATAAAACCTACTCCTCCCTTAA P: ACCACCACCCAACACACAATAACAAACACA |
133 | 58 59 69 |
F, forward; R, reverse; P, probe; Xsprobe, minor groove binder probe. Methylated CpG dinucleotides are in bold. Changed positions in the sequence due to the modification are indicated in italic.