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. 2013 Feb 1;8(2):220–228. doi: 10.4161/epi.23605

Table 1. Primer and probe sequences used for (q)MSP analysis.

Gene Primer and probe sequences
(5′−3′)
Amplicon
(bp)
Annealing
(°C)
hsa-miR-149
F: GTCGTGCGTTTAGTTTGTAGCG
R: CGACCTAAAAACCCCCGAC
P: CAAAACGAACGAAAACCTAAAAACCTCGAACA
111
59
58
68
hsa-miR-203
F: GTCGGTTTTCGGGATTCGTA
R: CGATTCGCCGAACTACGAAA
P: AACCGCCCGCGTC-Xsprobe
78
59
60
70
hsa-miR-210
F: GTCGGGTTGGGTAGGCG
R: CACTACCGAATAAACGAACGAAAAAA
90
59
61
hsa-miR-375
F: GGGGCGTTGTGTAGTATTGAGTTC
R: GAAACGAAAACGAAAAACCCG
P: AAACCTAACGATCGCCCTCGATAATCTCCTAATC
91
60
60
70
hsa-miR-572
F: TCGGTTTATTTTTTAGTTTCGTAGTGC
R: CACGACCTCGACACCTCCTAA
111
59
59
hsa-miR-638
F: TCGGTTAGAGTTGTTATTTGGATTTG
R: CCGACCCACGAAATTCTCC
96
59
59
ACTB F: TGGTGATGGAGGAGGTTTAGTAAGT
R: AACCAATAAAACCTACTCCTCCCTTAA
P: ACCACCACCCAACACACAATAACAAACACA
133 58
59
69

F, forward; R, reverse; P, probe; Xsprobe, minor groove binder probe. Methylated CpG dinucleotides are in bold. Changed positions in the sequence due to the modification are indicated in italic.