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. 2013 Feb 1;10(2):245–255. doi: 10.4161/rna.23019

Table 2. Crc ncRNA candidates identified in fully sequenced Pseudomonas genomes using CMsearch.

Strain Accession Score 5′-end 3′-end
Acinetobacter baumannii AYE
CU459140.1
15.73
78400
78422
Azotobacter vinelandii DJ
CP001157.1
94.02
4303297
4303638
Azotobacter vinelandii DJ
CP001157.1
176.76
452815c
452475c
Pseudomonas aeruginosa LESB58
FM209186.1
145.66
5642408
5642759
Pseudomonas aeruginosa M18
CP002496.1
143.25
5361488
5361839
Pseudomonas aeruginosa NCGM2 S1
AP012280.1
145.03
888676c
888325c
Pseudomonas aeruginosa PA7
CP000744.1
136.47
5610663
5611013
Pseudomonas aeruginosa UCBPP-PA14
CP000438.1
144.16
5580520
5580871
Pseudomonas aeruginosa
AE004091.2
145.4
5308589
5308940
Pseudomonas brassicacearum NFM421
CP002585.1
216.88
5835658
5836004
Pseudomonas brassicacearum NFM421
CP002585.1
244.44
2260512c
2260075c
Pseudomonas entomophila L48
CT573326.1
191.09
5029853
5030198
Pseudomonas entomophila L48
CT573326.1
191.06
3150228
3150563
Pseudomonas fluorescens F113
CP003150.1
243.42
4575452
4575888
Pseudomonas fluorescens F113
CP003150.1
217.08
5792772
5793163
Pseudomonas fluorescens Pf0 1
CP000094.2
237.33
4135995
4136343
Pseudomonas fluorescens Pf0 1
CP000094.2
220.71
5425228
5425569
Pseudomonas fluorescens Pf-5
CP000076.1
221.77
4546202
4546554
Pseudomonas fluorescens Pf-5
CP000076.1
211.49
6040962
6041305
Pseudomonas fluorescens SBW25
AM181176.4
217.28
5747060
5747403
Pseudomonas fluorescens SBW25
AM181176.4
207.9
4288010
4288357
Pseudomonas fulva 12 X
CP002727.1
127
4826693
4826974
Pseudomonas fulva 12 X
CP002727.1
90.4
1039803c
1039482c
Pseudomonas mendocina NK 01
CP002620.1
160.54
4286402
4286744
Pseudomonas mendocina ymp
CP000680.1
158.25
3959213
3959556
Pseudomonas putida BIRD 1
CP002290.1
211.49
4910564
4910909
Pseudomonas putida BIRD 1
CP002290.1
184.83
2566512c
2566177c
Pseudomonas putida F1
CP000712.1
214.87
5102227
5102575
Pseudomonas putida F1
CP000712.1
190.89
2543815c
2543483c
Pseudomonas putida GB 1
CP000926.1
214.82
5246762
5247112
Pseudomonas putida GB 1
CP000926.1
190.63
2668606c
2668277c
Pseudomonas putida KT2440
AE015451.1
213.48
5338277
5338622
Pseudomonas putida KT2440
AE015451.1
198.23
4013244
4013576
Pseudomonas putida S16
CP002870.1
209.22
5140236
5140582
Pseudomonas putida S16
CP002870.1
195.87
3401961
3402289
Pseudomonas putida W619
CP000949.1
214.69
814356c
814007c
Pseudomonas putida W619
CP000949.1
202.25
2173887c
2173555c
Pseudomonas stutzeri A1501
CP000304.1
174.07
2072801
2073136
Pseudomonas stutzeri A1501
CP000304.1
133.16
3565446
3565788
Pseudomonas stutzeri ATCC 17588 LMG 11199
CP002881.1
165.37
1910377
1910712
Pseudomonas stutzeri ATCC 17588 LMG 11199
CP002881.1
132.98
3575287
3575629
Pseudomonas stutzeri DSM 4166
CP002622.1
173.57
2058333
2058668
Pseudomonas stutzeri DSM 4166
CP002622.1
134.22
3663966
3664308
Pseudomonas syringae phaseolicola 1448A
CP000058.1
340.83
1738895c
1738527c
Pseudomonas syringae phaseolicola 1448A
CP000058.1
309.67
3034385c
3034033c
Pseudomonas syringae phaseolicola 1448A
CP000058.1
294.01
1024980c
1024622c
Pseudomonas syringae B728a
CP000075.1
333.11
4476099
4476467
Pseudomonas syringae B728a
CP000075.1
319.24
2865015c
2864663c
Pseudomonas syringae B728a
CP000075.1
291.23
941123c
940765c
Pseudomonas syringae tomato DC3000
AE016853.1
337.19
1778751c
1778383c
Pseudomonas syringae tomato DC3000
AE016853.1
293.85
1046951c
1046593c
Pseudomonas syringae tomato DC3000
AE016853.1
193.29
3045294c
3044933c
Pseudomonas syringae tomato DC3000 AE016853.1 107.52 3047265c 3047005c