Table 2.
SNPs shared by the attenuated varicella strains and VZV Ellen Strain
ORF | SNP | Residue | Ellen | 32/P72 | pOKA | vOKA | VarilRix | VariVax |
---|---|---|---|---|---|---|---|---|
ORF0 | T/C | Y72 | Y72H | |||||
ORF0 | T/C | *130 | *130R | *130R | *130R | *130R | ||
ORF6 | C/T | A1053 | A1053T | |||||
ORF8 | A/G | D44 | syn | |||||
ORF11 | G/A | A130 | A130T | |||||
ORF19 | T/C | L404 | syn | |||||
ORF21 | C/T | I191 | syn | |||||
ORF27 | G/A | Q261 | syn | |||||
ORF33 | C/A | P383 | syn | |||||
ORF33 | T/C | H291 | H291R | |||||
ORF36 | A/G | T26 | syn | |||||
ORF48 | C/T | T172 | T172I | |||||
ORF54 | T/C | V210 | syn | |||||
ORF55 | T/C | R57 | syn | |||||
ORF56 | A/G | A83 | syn | |||||
ORF57 | A/G | C66 | C66R | |||||
ORF59 | T/C | Q257 | Q257R | |||||
ORF59 | A/G | H157 | syn | |||||
ORF61 | C/T | A6 | A6T | |||||
ORF62 | T/C | I1260 | I1260V | I1260V | I1260V | I1260V | ||
ORF62 | A/C | S1254 | S1254A | |||||
ORF62 | T/C | E1243 | E1243G | |||||
ORF62 | T/C | S1241 | S1241G | |||||
ORF62 | T/C | Q1215 | Q1215R | |||||
ORF62 | T/C | A1093 | syn | |||||
ORF62 | T/C | Q1072 | Q1072R | |||||
ORF62 | T/C | Q1057 | Q1057R | |||||
ORF62 | T/C | K1045 | K1045E | |||||
ORF62 | A/G | L1028 | syn | |||||
ORF62 | A/G | L963 | syn | |||||
ORF62 | T/C | R958 | R958G | R958G | R958G | R958G | R958G | |
ORF62 | T/C | Q768 | Q768R | Q768Q/R | ||||
ORF62 | T/C | S628 | S628G | S628G | S628G | S628G | S628G | |
ORF62 | T/C | N195 | N195D | |||||
ORF62 | T/C | Q190 | syn | |||||
ORF62 | A/G | V172 | syn |
NOTE: Strain VZV Ellen is an attenuated strain. Strain 32/p72 is high passage 72 of a laboratory strain VZV 32. The parental strain of varicella vaccine is called pOka and the attenuated vaccine strain is called vOka. Varivax and Varilvax are the names of the commercial varicella vaccines.
Abbrreviation syn = synonymous SNP.