Table 3.
Phenotypic SNP frequencies.
| Long Hair FGF5 475A>C |
Burmese Points TYR 715G>T |
Siamese Points TYR 940G>A |
Chocolate TYRP1 1373+5G>A |
Cinnamon TYRP1 298C>T |
|||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Breed | n* | AA | AC | CC | Freq. C |
n* | GG | GT | TT | Freq. T |
n* | GG | GA | AA | Freq. A |
N* | GG | GA | AA | Freq. A |
n* | CC | CT | TT | Freq. T |
| Abyssinian | 15 | 15 | 0 | 0 | 0 | 15 | 15 | 0 | 0 | 0 | 15 | 15 | 0 | 0 | 0 | 15 | 12 | 3 | 0 | 0.10 | 15 | 4 | 6 | 5 | 0.53 |
| American SH | 13 | 10 | 2 | 1 | 0.15 | 13 | 11 | 2 | 0 | 0.08 | 13 | 13 | 0 | 0 | 0 | 13 | 12 | 0 | 1 | 0.08 | 13 | 13 | 0 | 0 | 0 |
| Australian Mist | 13 | 11 | 2 | 0 | 0.08 | 15 | 2 | 0 | 13 | 0.87 | 12 | 10 | 1 | 1 | 0.13 | 15 | 6 | 6 | 3 | 0.40 | 15 | 7 | 7 | 1 | 0.30 |
| Bengal | 16 | 15 | 1 | 0 | 0.03 | 18 | 16 | 2 | 0 | 0.06 | 14 | 9 | 4 | 1 | 0.21 | 18 | 16 | 2 | 0 | 0.06 | 17 | 17 | 0 | 0 | 0 |
| Birman | 19 | 0 | 0 | 19 | 1.00 | 20 | 20 | 0 | 0 | 0 | 16 | 0 | 0 | 16 | 1.00 | 20 | 12 | 5 | 3 | 0.28 | 20 | 20 | 0 | 0 | 0 |
| British SH | 18 | 16 | 2 | 0 | 0.06 | 18 | 18 | 0 | 0 | 0 | 17 | 13 | 0 | 4 | 0.24 | 18 | 11 | 2 | 5 | 0.33 | 18 | 15 | 3 | 0 | 0.08 |
| Burmese | 19 | 19 | 0 | 0 | 0 | 19 | 0 | 1 | 18 | 0.97 | 16 | 16 | 0 | 0 | 0 | 19 | 9 | 4 | 6 | 0.42 | 19 | 18 | 0 | 1 | 0.05 |
| Chartreux | 10 | 5 | 5 | 0 | 0.25 | 13 | 13 | 0 | 0 | 0 | 11 | 11 | 0 | 0 | 0 | 13 | 13 | 0 | 0 | 0 | 13 | 13 | 0 | 0 | 0 |
| Cornish Rex | 15 | 14 | 1 | 0 | 0.03 | 15 | 15 | 0 | 0 | 0 | 14 | 3 | 4 | 1 | 0.21 | 14 | 13 | 1 | 0 | 0.04 | 15 | 15 | 0 | 0 | 0 |
| Egyptian Mau | 12 | 12 | 0 | 0 | 0 | 14 | 14 | 0 | 0 | 0 | 12 | 12 | 0 | 0 | 0 | 14 | 14 | 0 | 0 | 0 | 14 | 14 | 0 | 0 | 0 |
| Exotic SH | 17 | 5 | 10 | 2 | 0.41 | 19 | 19 | 0 | 0 | 0 | 17 | 14 | 2 | 1 | 0.12 | 19 | 15 | 3 | 1 | 0.13 | 19 | 19 | 0 | 0 | 0 |
| Havana Brown | 11 | 11 | 0 | 0 | 0 | 14 | 14 | 0 | 0 | 0 | 12 | 10 | 1 | 1 | 0.13 | 14 | 0 | 1 | 13 | 0.96 | 14 | 14 | 0 | 0 | 0 |
| Japanese Bobtail | 14 | 8 | 2 | 4 | 0.36 | 18 | 18 | 0 | 0 | 0 | 15 | 13 | 2 | 0 | 0.07 | 19 | 19 | 0 | 0 | 0 | 19 | 19 | 0 | 0 | 0 |
| Korat | 23 | 22 | 1 | 0 | 0.02 | 25 | 25 | 0 | 0 | 0 | 21 | 20 | 1 | 0 | 0.02 | 25 | 1 | 2 | 22 | 0.92 | 25 | 25 | 0 | 0 | 0 |
| Maine Coon | 14 | 0 | 0 | 14 | 1.00 | 18 | 18 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 | 19 | 16 | 2 | 1 | 0.11 | 19 | 19 | 0 | 0 | 0 |
| Manx | 15 | 8 | 6 | 1 | 0.27 | 17 | 17 | 0 | 0 | 0 | 16 | 16 | 0 | 0 | 0 | 17 | 16 | 1 | 0 | 0.03 | 17 | 17 | 0 | 0 | 0 |
| Norwegian Forest | 13 | 8 | 3 | 2 | 0.27 | 16 | 16 | 0 | 0 | 0 | 15 | 15 | 0 | 0 | 0 | 16 | 15 | 0 | 1 | 0.06 | 16 | 16 | 0 | 0 | 0 |
| Ocicat | 8 | 8 | 0 | 0 | 0 | 10 | 10 | 0 | 0 | 0 | 9 | 9 | 0 | 0 | 0 | 10 | 4 | 1 | 5 | 0.55 | 10 | 6 | 3 | 1 | 0.25 |
| Persian | 15 | 0 | 1 | 14 | 0.97 | 15 | 15 | 0 | 0 | 0 | 15 | 5 | 4 | 6 | 0.53 | 15 | 12 | 2 | 1 | 0.13 | 15 | 15 | 0 | 0 | 0 |
| Ragdoll | 15 | 4 | 3 | 8 | 0.63 | 15 | 15 | 0 | 0 | 0 | 15 | 0 | 0 | 15 | 1.00 | 15 | 13 | 2 | 0 | 0.07 | 15 | 15 | 0 | 0 | 0 |
| Russian Blue | 15 | 14 | 0 | 1 | 0.07 | 17 | 16 | 1 | 0 | 0.03 | 15 | 11 | 3 | 1 | 0.17 | 17 | 17 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 |
| Scottish Fold | 16 | 13 | 3 | 0 | 0.09 | 17 | 17 | 0 | 0 | 0 | 15 | 14 | 1 | 0 | 0.03 | 17 | 13 | 4 | 0 | 0.12 | 17 | 17 | 0 | 0 | 0 |
| Siamese | 15 | 15 | 0 | 0 | 0 | 15 | 15 | 0 | 0 | 0 | 13 | 0 | 0 | 13 | 1.00 | 15 | 2 | 6 | 7 | 0.67 | 15 | 15 | 0 | 0 | 0 |
| Siberian | 14 | 1 | 3 | 10 | 0.82 | 16 | 16 | 0 | 0 | 0 | 15 | 8 | 6 | 1 | 0.27 | 17 | 16 | 1 | 0 | 0.03 | 17 | 17 | 0 | 0 | 0 |
| Singapura | 16 | 16 | 0 | 0 | 0 | 15 | 0 | 0 | 15 | 1.00 | 14 | 14 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 |
| Sokoke | 6 | 6 | 0 | 0 | 0 | 7 | 7 | 0 | 0 | 0 | 4 | 3 | 0 | 1 | 0.25 | 6 | 5 | 1 | 0 | 0.08 | 7 | 7 | 0 | 0 | 0 |
| Sphynx | 16 | 9 | 1 | 6 | 0.41 | 16 | 6 | 6 | 4 | 0.44 | 12 | 9 | 1 | 2 | 0.21 | 17 | 8 | 5 | 4 | 0.38 | 17 | 17 | 0 | 0 | 0 |
| Turkish Angora | 20 | 0 | 0 | 20 | 1.00 | 21 | 21 | 0 | 0 | 0 | 20 | 17 | 1 | 2 | 0.13 | 20 | 15 | 5 | 0 | 0.13 | 21 | 21 | 0 | 0 | 0 |
| Turkish Van | 18 | 0 | 0 | 18 | 1.00 | 19 | 19 | 0 | 0 | 0 | 20 | 19 | 1 | 0 | 0.03 | 19 | 14 | 2 | 3 | 0.21 | 20 | 20 | 0 | 0 | 0 |
*
All individuals were attempted for all phenotypic SNPs; differing sample sizes are due to assay drop out.