Table 2. Major characteristics of DGE libraries.
PYd21 | H1521 | PYd15 | ||||||
Distinct Tag | Total Tag | Distinct Tag | Total Tag | Distinct Tag | Total Tag | |||
Raw Data | 149096 | 5997268 | 199222 | 5838613 | 200492 | 5876147 | ||
Tags Containing N | 4485 | 7989 | 10815 | 34045 | 8115 | 16612 | ||
Adaptors | 185 | 202 | 125 | 131 | 442 | 518 | ||
Tag CopyNum = 1 | 38176 | 38176 | 102656 | 102656 | 105163 | 105163 | ||
Clean Tag | 106250 | 5950901 | 85626 | 5701781 | 86772 | 5753854 | ||
CopyNum > = 2 | 106250 | 5950901 | 85626 | 5701781 | 86772 | 5753854 | ||
CopyNum >5 | 50796 | 5773726 | 38241 | 5566832 | 38525 | 5616866 | ||
CopyNum >10 | 31336 | 5627851 | 26167 | 5475214 | 26479 | 5525603 | ||
CopyNum >20 | 20261 | 5466439 | 18146 | 5358011 | 18269 | 5405543 | ||
CopyNum >50 | 11261 | 5179615 | 11094 | 5130768 | 11056 | 5172985 | ||
CopyNum >100 | 6792 | 4861631 | 7347 | 4862831 | 7341 | 4908306 |