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. 2013 Mar 12;8(3):e58454. doi: 10.1371/journal.pone.0058454

Table 1. Predicted targets for selected differentially regulated miRNAs in granulopoiesis.

miRNA Predicted Targets
hsa-miR-130a Both Targetscan and miRanda : MYB, SMAD4, CSF1, TGFBR2, MYBL1, CBFB, PTEN, HOXA5, IGF1, CREB1
Targetscan: ACVR1, MLL3, CDK19, SMAD5, MAP3K12, TGFBR1, MAPK1, STAT3, E2F2.
miRanda: IL7, TNF, IL22, IL15, CYBB, E2F7, STAT3, SMAD5, TLR7, MLL4, IL16, TGFBR3, MAP2K5, MAPK6, SMAD7, TAB1, E2F8, MEIS1, AKT3, MAP3K14, MLL5, IL26.
hsa-miR-155 Both Targetscan and miRanda: MYB, CEBPB, SP1, MAP3K14, MYBL1, SPI1, CUX1, E2F2, MEIS1, SP3, TAB2
Targetscan: SMAD2, MAP3K10, TAB2, TRAF3, TBRG1,MYD88
miRanda: FOS, MLL5, E2F5, E2F3, SP8, SMAD1, IL7, TGFA, OLFM4, GFI1, SMAD6, ELF1, EGFR, SMAD5, E2F2, E2F7, CDK7, MAP3K8, HOXA3, DEFA5, IL23R, JAK2, GATA3, CBFB, AKT2, IL13, TGFBR2, SP2, CYBB, CDK2, PTEN, CEBPD, STAT1, IL18R1, MAPK1, IL12A.
hsa-miR-146a Both Targetscan and miRanda: TRAF6, IRAK1, SMAD4, MYBL1, NOTCH2, SP8.
Targetscan: CUX1
miRanda: TLR2, RUNX1T1, MLL5, TAB2, STAT1, CDK9, TGFBR1, RARA,TLR4, CDK1, RUNX1, IL6R, SP3, IL23R, FAS, MEIS1, IL3.
hsa-miR-34c-3p Both Targetscan and miRanda: MAP3K2, FLT3, RUNX1T1.
Targetscan: CDK17, PDGFB.
miRanda: HOXA13, IL23R, CREB1, AKT3, HOXA2, IL1A, MAP4K5, FLT1, CYBB, TRAF5, CDK7, MMP8, GATA3, FOXP2, VCAM1, GFI1, ACTR3, IRAK4, CD34, MAP3K9, OLFM4, SP3, IL3RA, TAB2, PTPN9, IL15, IL19, CDK13, NOTCH1, CBFB, CSF1, CUX1, SMAD4, E2F2, F2F5, E2F7.
hsa-miR-99b Both Targetscan and miRanda: MTOR, HOXA1.
Targetscan: NOX4, IGFR1.
MicroRNA.org: CYBB, MLL3, FAS, PIK3R3, CDK7.
hsa-miR-183 Both Targetscan and miRanda: PTPN4, CUX1.
Targetscan: TGB1, FOXP1, FOX01, TAB3, MAP3K4, MAP3K13.
miRanda: SMAD4, PIK3R1, MAPK9, MMP9, SMAD2, NFKB1, TLR8, TAB2, SP7, IL12B, E2F3, EGFR, FAS, CUX2, VCAM1, MTOR, RUNX1, E2F5, MAP2K6, NOTCH2, MYC, PTPN9, MAP3K5, MAPK7, IL8, HOXA5, IL23R, AKT1, MAP2K5, TRAF2, CDK4.
hsa-miR-26a Both Targetscan and miRanda: CBFB, SP3, MYBL1, SP1, CUX1,
Targetscan: CDC6, CDK8, TAB3, RB1, CREBBP.
miRanda: IL8R1, MAP3K1, CDK8, TAB2, MAPK6, MAP3K8, MLL3, CREB1, JAK2, MAPK10, VEGFA, CDK12, SMAD6, MAPK13, TGFBR2, STAT2, MAP3K2, IL6, CYBB, HOXD8, SP8, MEIS2, HOXD13, HOXA4, CBFB, TRAF3, SMAD4, CDK1, SMAD5, TGFB2, E2F5, CDK14.
hsa-miR-223 Both Targetscan and miRanda: CBFB, SP3, MYBL1, SP1, CUX1,
Targetscan: TGFBR3, CDK17, E2F1.
miRanda: EGFR, STAT1, OLFM4, IL3, SMAD1, CDK9, MEIS1, ICAM1, MYC, GFI1, FAS, MAPK4, CDK8, NOTCH2, PTEN, IL23A, IL12B, NOTCH1.
hsa-miR-27a Both Targetscan and miRanda: FOXP2, E2F7, CBFB, RUNX1, RARA, HOXA10, EGFR, TAB3.
Targetscan: MAP2K4, HOXA5, HOXB8, HOXA13, SMAD9, CREB1, PKIA, TRAF3, SMAD5, CDK18, ITGA2, MLL3, FOXP4, MAPK10, SP6, CDK8, MAPK12.
miRanda: FAS, MLL3, HOXB5, HOXA9, SMAD9, MAPK13, FOXA3, E2F5, MAPK9, SMAD1, MYB, IRAK4, IL23R, IL16, CSF1, CYBB, PTPN9, IL24, IL12A, MMP7, CDK12, CEBPE, MAP2, CDK18, MLL5, MLL, CEBPG, SMAD4, ICAM2, NOTCH1, PTEN, IL19, E4F1, STAT1.

The table lists the different predicted targets from two different prediction algorithms, miRanda and Targetscan. The targets are listed as predicted by both prediction algorithms or by either one and were selected based on their importance in granulopoiesis and granulocyte function.