Table 1. Predicted targets for selected differentially regulated miRNAs in granulopoiesis.
miRNA | Predicted Targets |
hsa-miR-130a | Both Targetscan and miRanda : MYB, SMAD4, CSF1, TGFBR2, MYBL1, CBFB, PTEN, HOXA5, IGF1, CREB1 |
Targetscan: ACVR1, MLL3, CDK19, SMAD5, MAP3K12, TGFBR1, MAPK1, STAT3, E2F2. | |
miRanda: IL7, TNF, IL22, IL15, CYBB, E2F7, STAT3, SMAD5, TLR7, MLL4, IL16, TGFBR3, MAP2K5, MAPK6, SMAD7, TAB1, E2F8, MEIS1, AKT3, MAP3K14, MLL5, IL26. | |
hsa-miR-155 | Both Targetscan and miRanda: MYB, CEBPB, SP1, MAP3K14, MYBL1, SPI1, CUX1, E2F2, MEIS1, SP3, TAB2 |
Targetscan: SMAD2, MAP3K10, TAB2, TRAF3, TBRG1,MYD88 | |
miRanda: FOS, MLL5, E2F5, E2F3, SP8, SMAD1, IL7, TGFA, OLFM4, GFI1, SMAD6, ELF1, EGFR, SMAD5, E2F2, E2F7, CDK7, MAP3K8, HOXA3, DEFA5, IL23R, JAK2, GATA3, CBFB, AKT2, IL13, TGFBR2, SP2, CYBB, CDK2, PTEN, CEBPD, STAT1, IL18R1, MAPK1, IL12A. | |
hsa-miR-146a | Both Targetscan and miRanda: TRAF6, IRAK1, SMAD4, MYBL1, NOTCH2, SP8. |
Targetscan: CUX1 | |
miRanda: TLR2, RUNX1T1, MLL5, TAB2, STAT1, CDK9, TGFBR1, RARA,TLR4, CDK1, RUNX1, IL6R, SP3, IL23R, FAS, MEIS1, IL3. | |
hsa-miR-34c-3p | Both Targetscan and miRanda: MAP3K2, FLT3, RUNX1T1. |
Targetscan: CDK17, PDGFB. | |
miRanda: HOXA13, IL23R, CREB1, AKT3, HOXA2, IL1A, MAP4K5, FLT1, CYBB, TRAF5, CDK7, MMP8, GATA3, FOXP2, VCAM1, GFI1, ACTR3, IRAK4, CD34, MAP3K9, OLFM4, SP3, IL3RA, TAB2, PTPN9, IL15, IL19, CDK13, NOTCH1, CBFB, CSF1, CUX1, SMAD4, E2F2, F2F5, E2F7. | |
hsa-miR-99b | Both Targetscan and miRanda: MTOR, HOXA1. |
Targetscan: NOX4, IGFR1. | |
MicroRNA.org: CYBB, MLL3, FAS, PIK3R3, CDK7. | |
hsa-miR-183 | Both Targetscan and miRanda: PTPN4, CUX1. |
Targetscan: TGB1, FOXP1, FOX01, TAB3, MAP3K4, MAP3K13. | |
miRanda: SMAD4, PIK3R1, MAPK9, MMP9, SMAD2, NFKB1, TLR8, TAB2, SP7, IL12B, E2F3, EGFR, FAS, CUX2, VCAM1, MTOR, RUNX1, E2F5, MAP2K6, NOTCH2, MYC, PTPN9, MAP3K5, MAPK7, IL8, HOXA5, IL23R, AKT1, MAP2K5, TRAF2, CDK4. | |
hsa-miR-26a | Both Targetscan and miRanda: CBFB, SP3, MYBL1, SP1, CUX1, |
Targetscan: CDC6, CDK8, TAB3, RB1, CREBBP. | |
miRanda: IL8R1, MAP3K1, CDK8, TAB2, MAPK6, MAP3K8, MLL3, CREB1, JAK2, MAPK10, VEGFA, CDK12, SMAD6, MAPK13, TGFBR2, STAT2, MAP3K2, IL6, CYBB, HOXD8, SP8, MEIS2, HOXD13, HOXA4, CBFB, TRAF3, SMAD4, CDK1, SMAD5, TGFB2, E2F5, CDK14. | |
hsa-miR-223 | Both Targetscan and miRanda: CBFB, SP3, MYBL1, SP1, CUX1, |
Targetscan: TGFBR3, CDK17, E2F1. | |
miRanda: EGFR, STAT1, OLFM4, IL3, SMAD1, CDK9, MEIS1, ICAM1, MYC, GFI1, FAS, MAPK4, CDK8, NOTCH2, PTEN, IL23A, IL12B, NOTCH1. | |
hsa-miR-27a | Both Targetscan and miRanda: FOXP2, E2F7, CBFB, RUNX1, RARA, HOXA10, EGFR, TAB3. |
Targetscan: MAP2K4, HOXA5, HOXB8, HOXA13, SMAD9, CREB1, PKIA, TRAF3, SMAD5, CDK18, ITGA2, MLL3, FOXP4, MAPK10, SP6, CDK8, MAPK12. | |
miRanda: FAS, MLL3, HOXB5, HOXA9, SMAD9, MAPK13, FOXA3, E2F5, MAPK9, SMAD1, MYB, IRAK4, IL23R, IL16, CSF1, CYBB, PTPN9, IL24, IL12A, MMP7, CDK12, CEBPE, MAP2, CDK18, MLL5, MLL, CEBPG, SMAD4, ICAM2, NOTCH1, PTEN, IL19, E4F1, STAT1. |
The table lists the different predicted targets from two different prediction algorithms, miRanda and Targetscan. The targets are listed as predicted by both prediction algorithms or by either one and were selected based on their importance in granulopoiesis and granulocyte function.