Table 1.
Fitness Scores for the Top 25 Mutants Identified as Significantly Sensitive to the Dieldrin IC20 (460μM) After 15 Generations of Growth
Log2 values | Deleted gene | Description | ||
---|---|---|---|---|
25% IC20 | 50% IC20 | 100% IC20 | ||
−3.90 | −4.95 | −6.80 | IRA2 | GTPase-activating protein; negatively regulates Ras |
−4.00 | −4.40 | −6.10 | GYP1 | GTPase-activating protein; involved in vesicle docking |
−5.60 | −5.65 | BAP2 | High-affinity leucine permease | |
−3.75 | −4.85 | −5.60 | PDC1 | Major of three pyruvate decarboxylase isozymes |
−3.10 | −3.95 | −5.25 | YJL120W | Dubious ORF; partially overlaps the verified gene RPE1 |
−4.90 | −4.50 | −5.05 | PDR5 | Multidrug transporter |
−4.70 | −5.20 | −5.00 | YCR007C | Putative integral membrane protein |
−3.10 | −3.10 | −4.90 | IRS4 | Regulates PtdIns(4,5)P2 levels and autophagy |
−1.30 | −1.60 | −4.90 | SOK2 | Regulator of PKA signal transduction pathway |
−1.65 | −1.45 | −4.85 | TCB3 | Lipid-binding protein |
−3.80 | −5.30 | −4.80 | SLT2 | MAPK involved in cell wall integrity and cell cycle progression |
−4.90 | −4.90 | −4.80 | YML079W | Unknown function; structurally similar to plant storage proteins |
−4.15 | −4.45 | −4.70 | TIM18 | Component of the mitochondrial TIM22 complex |
−2.00 | −2.40 | −4.70 | OPI3 | Phospholipid methyltransferase |
−3.20 | −3.40 | −4.60 | SIS2 | Negative regulatory subunit of protein phosphatase 1 |
−2.55 | −2.35 | −4.60 | SCJ1 | Homolog of bacterial chaperone DnaJ |
−4.20 | −3.50 | −4.50 | SIW14 | Tyr phosphatase; involved in actin organization and endocytosis |
−2.10 | −2.55 | −4.45 | CNB1 | Calcineurin B; the regulatory subunit of calcineurin |
−2.30 | −2.75 | −4.35 | OSH3 | Oxysterol-binding protein; functions in sterol metabolism |
−1.90 | −2.85 | −4.25 | UFD2 | Ubiquitin chain assembly factor (E4) |
−3.05 | −4.90 | −4.10 | IMP2′ | Transcriptional activator; maintains ion homeostasis |
−3.05 | −2.75 | −4.10 | BRE5 | Ubiquitin protease cofactor; forms complex with Ubp3p |
−4.00 | −4.30 | −4.00 | SAP4 | Protein required for function of the Sit4p protein phosphatase |
−2.90 | −3.60 | −4.00 | ECM30 | Nonessential protein of unknown function |
−2.60 | −2.40 | −4.00 | BST1 | GPI inositol deacylase; negatively regulates vesicle formation |
Note. Fitness scores quantify the requirement of a gene for growth and are defined as the normalized log2 ratio of the deletion strain’s growth in the presence versus absence of dieldrin. A total of 427 genes were important for fitness (i.e., had negative fitness scores) in at least one dieldrin treatment. Supplementary table 1 contains a list of all genes identified as significant by DSSA.