Table 5.
Genetic loci associated with the occurrence of two or more antiphospholipid antibodies (ACL, LAC, or Anti-β 2GPI) with P < 1E − 04*.
| CHR | Gene | Lead SNP | BP | Total SNPs | MAF | OR | P | |
|---|---|---|---|---|---|---|---|---|
| Negative | Positive | |||||||
| 16 | DYNLRB2 | rs8060581 | 78750106 | 6 | 0.02466 | 0.1406 | 6.714 | 1.44E − 06 |
| 2 | SESTD1 | rs13403289 | 179924976 | 2 | 0.3857 | 0.5833 | 2.423 | 6.08E − 06 |
| 1 | DNAH14 | rs3913653 | 223603694 | 11 | 0.543 | 0.3421 | 0.43 | 1.09E − 05 |
| 10 | CACNB2 | rs10828616 | 18710023 | 6 | 0.2175 | 0.3698 | 2.538 | 1.11E − 05 |
| 18 | EPB41L3 | rs7238186 | 5469093 | 2 | 0.213 | 0.3854 | 2.327 | 2.61E − 05 |
| 1 | MAGI3 | rs11102625 | 113750976 | 5 | 0.4355 | 0.6146 | 2.298 | 2.75E − 05 |
| 2 | TANK | rs13010671 | 161593338 | 5 | 0.07442 | 0.1882 | 3.437 | 3.17E − 05 |
| 7 | CNTNAP2 | rs12113442 | 145329124 | 1 | 0.1054 | 0.2188 | 2.938 | 3.43E − 05 |
| 18 | ZNF519 | rs8093228 | 13989380 | 4 | 0.2152 | 0.3646 | 2.326 | 4.85E − 05 |
| 3 | FAM198A | rs7624799 | 43020807 | 3 | 0.1592 | 0.2969 | 2.466 | 5.00E − 05 |
| 20 | DSTN | rs17791782 | 17514069 | 2 | 0.07883 | 0.1927 | 3.086 | 5.06E − 05 |
| 20 | BFSP1 | rs16999416 | 17489830 | 1 | 0.08371 | 0.2031 | 2.93 | 5.63E − 05 |
| 13 | ANKRD20A9P | rs7319595 | 18392986 | 1 | 0.3484 | 0.5213 | 2.337 | 5.75E − 05 |
| 15 | TLE3 | rs10518889 | 68337482 | 4 | 0.2838 | 0.4427 | 2.231 | 6.17E − 05 |
| 22 | CLTCL1 | rs8135222 | 17672446 | 1 | 0.1749 | 0.3281 | 2.293 | 6.19E − 05 |
| 11 | TMEM45B | rs10894119 | 129081436 | 1 | 0.1789 | 0.3158 | 2.432 | 6.25E − 05 |
| 1 | GADD45A | rs787480 | 67868460 | 1 | 0.2207 | 0.08854 | 0.3088 | 6.57E − 05 |
| 20 | SPTLC3 | rs6105044 | 13065747 | 2 | 0.352 | 0.1979 | 0.4138 | 7.08E − 05 |
| 6 | HIVEP1 | rs6908010 | 12325985 | 2 | 0.4753 | 0.3073 | 0.4688 | 7.11E − 05 |
| 7 | CUX1 | rs427534 | 101673424 | 3 | 0.4439 | 0.2656 | 0.4569 | 7.28E − 05 |
| 10 | MSMB | rs7094791 | 51229942 | 1 | 0.3857 | 0.2396 | 0.4081 | 7.35E − 05 |
| 8 | TPD52 | rs10090469 | 81396522 | 1 | 0.1099 | 0.2292 | 2.668 | 7.43E − 05 |
| 14 | LOC100506433 | rs698322 | 47597316 | 1 | 0.3914 | 0.2344 | 0.4277 | 7.58E − 05 |
| 6 | MMS22L | rs1206164 | 97703068 | 1 | 0.2511 | 0.4219 | 2.212 | 8.26E − 05 |
| 12 | CDK17 | rs11108526 | 95379901 | 2 | 0.02691 | 0.08333 | 5.95 | 8.40E − 05 |
| 11 | PDGFD | rs4754095 | 103278377 | 3 | 0.2851 | 0.1436 | 0.3771 | 8.83E − 05 |
| 15 | FMN1 | rs2444955 | 31199305 | 2 | 0.1951 | 0.3474 | 2.408 | 8.89E − 05 |
| 10 | SORCS1 | rs4918273 | 108715485 | 11 | 0.3597 | 0.5319 | 2.064 | 8.92E − 05 |
*CHR: chromosome; Gene: a plausible biological candidate gene in the locus or the nearest annotated gene to the lead SNP; Lead SNP: most significant SNP in the gene region; BP: base-pair position of the lead SNP; Total SNPs: total number of SNPs with P < 1E − 03 in the gene region; MAF: minor allele frequencies in antibody-negative (negative for ALC, ACL and anti-β 2GPI) and antibody-positive (positive for at least two of ALC, ACL or anti-β 2GPI) groups; OR: odds ratio; P: P-values for the test.