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. 2013 Mar 13;8(3):e58798. doi: 10.1371/journal.pone.0058798

Table 1. SNPs with P<0.1 in our Replication Study.

SNP Gene Chr Reason for Inclusionin Study Minor allele MAF cases MAF controls OR P-value Padjusted 1
rs1614972 ADH1C 4 Replicated in German GWAS C 0.265 0.311 0.80 0.0017 0.0015
rs708006 MTCH1/PI16 6 German GWAS: p<10−6 in discovery stage C 0.142 0.173 0.79 0.0074 0.0072
rs728115 KCND2 7 SAGE GWAS: 2 SNPs in same gene with p<10−4 G 0.108 0.091 1.21 0.073 0.081
rs17142876 KCND2 7 SAGE GWAS: 2 SNPs in same gene with p<10−4 A 0.103 0.086 1.21 0.075 0.084
1

Padjusted = P-value from a logistic regression model adjusted for ancestry probabilities determined by STRUCTURE analysis.