Table 1. SNPs with P<0.1 in our Replication Study.
SNP | Gene | Chr | Reason for Inclusionin Study | Minor allele | MAF cases | MAF controls | OR | P-value | Padjusted 1 |
rs1614972 | ADH1C | 4 | Replicated in German GWAS | C | 0.265 | 0.311 | 0.80 | 0.0017 | 0.0015 |
rs708006 | MTCH1/PI16 | 6 | German GWAS: p<10−6 in discovery stage | C | 0.142 | 0.173 | 0.79 | 0.0074 | 0.0072 |
rs728115 | KCND2 | 7 | SAGE GWAS: 2 SNPs in same gene with p<10−4 | G | 0.108 | 0.091 | 1.21 | 0.073 | 0.081 |
rs17142876 | KCND2 | 7 | SAGE GWAS: 2 SNPs in same gene with p<10−4 | A | 0.103 | 0.086 | 1.21 | 0.075 | 0.084 |
Padjusted = P-value from a logistic regression model adjusted for ancestry probabilities determined by STRUCTURE analysis.