Table 2. Variations in GJB2, GJB3, GJB6, SLC26A4 and SLC26A5 genes identified in the subjects.
Gene | Nucleotide change | Amino acid change | Domain | Mutation type | Category | Patients (n) |
Controls (n) |
||||
Homo | Hetero | Allele frequency(%) | Homo | Hetero | Allele frequency(%) | ||||||
GJB2 | 79G>A | V27I | TM1 | Missense | Polymorphism | 4 | 10 | 6.67 | 13 | 20 | 17.04 |
79G>A+341A>G | V27I+E114G | TM1+IC2 | Missense | Undefined | 3 | 2 | 2.96 | 1 | 1 | 1.11 | |
79G>A+109G>A | V27I+V37I | TM1 | Missense | Undefined | 0 | 1 | 0.37 | 0 | 0 | 0.00 | |
109G>A | V37I | TM1 | Missense | Undefined | 2 | 5 | 3.33 | 0 | 3 | 1.11 | |
101T>C | M34T | TM1 | Missense | Polymorphism | 0 | 1 | 0.37 | 0 | 0 | 0.00 | |
176-191del16 | 176-191del16 | EC1 | Deletion | Pathogenic | 0 | 1 | 0.37 | 0 | 1 | 0.37 | |
235delC | 235delC | TM2 | Deletion | Pathogenic | 18 | 19 | 20.37 | 0 | 2 | 0.74 | |
299-300delAT | 299-300delAT | IC2 | Deletion | Pathogenic | 0 | 6 | 2.22 | 0 | 1 | 0.37 | |
341A>G | E114G | IC2 | Missense | Polymorphism | 3 | 7 | 4.81 | 1 | 5 | 2.59 | |
368C>A | T123N | IC2 | Missense | Pathogenic | 1 | 1 | 1.11 | 0 | 1 | 0.37 | |
504insAAGG | 504insAAGG | EC2 | Insertion | Pathogenic | 0 | 2 | 0.74 | 0 | 0 | 0.00 | |
608TC>AA | I203K | TM4 | Missense | Polymorphism | 0 | 2 | 0.74 | 0 | 8 | 2.96 | |
GJB3 | 357C>T | N119N | IC2 | Samesense | Polymorphism | 0 | 2 | 0.74 | 0 | 0 | 0.00 |
866G>A | 3′UTR | Missense | Polymorphism | 0 | 6 | 2.22 | 0 | 1 | 0.37 | ||
GJB6 | 232 kb del | Frameshift | TM3 | Deletion | Pathogenic | 4 | 1 | 3.33 | 0 | 0 | 0.00 |
SLC26A4 | IVS7-2A>G | Splice site | intravening | Missense | Pathogenic | 7 | 11 | 9.26 | 0 | 0 | 0.00 |
IVS7-2A>G+ | Splice site + H723R | sequence7 | Missense | Pathogenic | 0 | 2 | 0.74 | 0 | 0 | 0.00 | |
2168A>G | intravening | ||||||||||
2167 C>G | H723D | sequence7 STAS | Missense | Pathogenic | 0 | 1 | 0.37 | 0 | 0 | 0.00 | |
SLC26A5 | IVS2-2A>G | Splice site | intravening sequence2 | Missense | Pathogenic | 0 | 0 | 0.00 | 0 | 0 | 0.00 |
UTR: untranslated region; IC: intracellular; TM: transmembrane; EC: extracellular; STAS: sulfate transporter and anti-sigma antagonist