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. 2013 Mar 14;8(3):e58896. doi: 10.1371/journal.pone.0058896

Table 1. Proteins used for the analysis of molecular surfaces.

Dataset No. RMSD(residues) No. Protein name PDB code Atoms Residues Chains
1 1 α lactalbumin 1A4V 1092 123 1
2 2 porcine β-lactoglobulin 1EXS 1248 160 1
3 bovine β-lactoglobulin 1BEB 2473 324 2
3, Subset 3.1 RMSD(129) = 0.6481 4 hen egg-white lysozyme 1LYZ 1001 129 1
5 turkey egg-white lysozyme 135L 994 129 1
6 hen egg-white lysozyme 2LYM 1001 129 1
7 triciclic lysozyme 2LZT 1001 129 1
3, Subset 3.2 RMSD(164) = 0.24 8 mutant of phage T4 lysozyme 1L35 1305 164 1
9 T4 lysozyme 1LYD 1309 164 1
4 RMSD(124) = 0.1655 10 ribonuclease-A 8RAT 951 124 1
11 ribonuclease-A 1RBX 956 124 1
12 bovine ribonuclease-A 3RN3 957 124 1
13 ribonuclease-A 1AFU 1894 248 2
5, Subset 5.1 RMSD(287)  = 0.8877 14 human oxyhemoglobin 1HHO 2192 287 2
15 human carbonmonoxy hemoglobin 2HCO 2192 287 2
16 horse deoxyhemoglobin 2DHB 2201 287 2
5, Subset 5.2 RMSD(574)  = 1.501 17 human hemoglobin A 1BUW 4342 574 4
18 human hemoglobin (W37A) 1Y4F 4368 574 4
19 hemoglobin mutant (W37A) 1A01 4368 574 4
20 human hemoglobin (W37E) 1Y4P 4376 574 4
21 hemoglobin mutant (W37Y) 1A00 4382 574 4
22 human hemoglobin (W37Y) 1Y46 4382 574 4
23 human deoxyhemoglobin 2HHB 4384 574 4
24 human hemoglobin (W37G) 1Y4G 4366 574 4
25 hemoglobin mutant (V1M) 1A0U 4386 574 4
26 hemoglobin mutant (V1M) 1A0Z 4386 574 4
27 recombinant hemoglobin 1C7D 4396 576 3
6 RMSD(585) = 2.3740 28 human serum albumin complexed with octadecanoic acid 1E7I 4496 585 1
29 recombinant human serum albumin 1UOR 4617 585 1
30 human serum albumin 1E78 4302 585 1
31 human serum albumin 1AO6 4600 585 1
32 human serum albumin 1BM0 4600 585 1
7 33 immunoglobulin 1IGY 10002 1294 4
34 immunoglobulin 1IGT 10196 1316 4
35 intact human IgG B12 1HZH 10355 1344 4