Table 1. Proteins used for the analysis of molecular surfaces.
Dataset No. RMSD(residues) | No. | Protein name | PDB code | Atoms | Residues | Chains |
1 | 1 | α lactalbumin | 1A4V | 1092 | 123 | 1 |
2 | 2 | porcine β-lactoglobulin | 1EXS | 1248 | 160 | 1 |
3 | bovine β-lactoglobulin | 1BEB | 2473 | 324 | 2 | |
3, Subset 3.1 RMSD(129) = 0.6481 | 4 | hen egg-white lysozyme | 1LYZ | 1001 | 129 | 1 |
5 | turkey egg-white lysozyme | 135L | 994 | 129 | 1 | |
6 | hen egg-white lysozyme | 2LYM | 1001 | 129 | 1 | |
7 | triciclic lysozyme | 2LZT | 1001 | 129 | 1 | |
3, Subset 3.2 RMSD(164) = 0.24 | 8 | mutant of phage T4 lysozyme | 1L35 | 1305 | 164 | 1 |
9 | T4 lysozyme | 1LYD | 1309 | 164 | 1 | |
4 RMSD(124) = 0.1655 | 10 | ribonuclease-A | 8RAT | 951 | 124 | 1 |
11 | ribonuclease-A | 1RBX | 956 | 124 | 1 | |
12 | bovine ribonuclease-A | 3RN3 | 957 | 124 | 1 | |
13 | ribonuclease-A | 1AFU | 1894 | 248 | 2 | |
5, Subset 5.1 RMSD(287) = 0.8877 | 14 | human oxyhemoglobin | 1HHO | 2192 | 287 | 2 |
15 | human carbonmonoxy hemoglobin | 2HCO | 2192 | 287 | 2 | |
16 | horse deoxyhemoglobin | 2DHB | 2201 | 287 | 2 | |
5, Subset 5.2 RMSD(574) = 1.501 | 17 | human hemoglobin A | 1BUW | 4342 | 574 | 4 |
18 | human hemoglobin (W37A) | 1Y4F | 4368 | 574 | 4 | |
19 | hemoglobin mutant (W37A) | 1A01 | 4368 | 574 | 4 | |
20 | human hemoglobin (W37E) | 1Y4P | 4376 | 574 | 4 | |
21 | hemoglobin mutant (W37Y) | 1A00 | 4382 | 574 | 4 | |
22 | human hemoglobin (W37Y) | 1Y46 | 4382 | 574 | 4 | |
23 | human deoxyhemoglobin | 2HHB | 4384 | 574 | 4 | |
24 | human hemoglobin (W37G) | 1Y4G | 4366 | 574 | 4 | |
25 | hemoglobin mutant (V1M) | 1A0U | 4386 | 574 | 4 | |
26 | hemoglobin mutant (V1M) | 1A0Z | 4386 | 574 | 4 | |
27 | recombinant hemoglobin | 1C7D | 4396 | 576 | 3 | |
6 RMSD(585) = 2.3740 | 28 | human serum albumin complexed with octadecanoic acid | 1E7I | 4496 | 585 | 1 |
29 | recombinant human serum albumin | 1UOR | 4617 | 585 | 1 | |
30 | human serum albumin | 1E78 | 4302 | 585 | 1 | |
31 | human serum albumin | 1AO6 | 4600 | 585 | 1 | |
32 | human serum albumin | 1BM0 | 4600 | 585 | 1 | |
7 | 33 | immunoglobulin | 1IGY | 10002 | 1294 | 4 |
34 | immunoglobulin | 1IGT | 10196 | 1316 | 4 | |
35 | intact human IgG B12 | 1HZH | 10355 | 1344 | 4 |