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. 2013 Mar 14;9(3):e1002935. doi: 10.1371/journal.pcbi.1002935

Figure 4. Schematic diagram of the hierarchical model.

Figure 4

The red letter A represents the test base, with each read covering this position contributing an IPD, denoted by Inline graphic and Inline graphic for native and control samples(if available), respectively, where Inline graphic and Inline graphic indicate the sequence coverage. IPDs of homologous positions in historical data are denoted by Inline graphic, where Inline graphic and Inline graphic is the number of homologous positions.