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. 2013 Mar 14;9(3):e1002962. doi: 10.1371/journal.pcbi.1002962

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© 2013 Grau et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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(A) The nucleotide preferences for position 0 are visualized as a sequence logo. (B) The binding specificities for the different RVDs are plotted in analogy to sequence logos as well, whereas the probabilities representing importance of RVDs are plotted against the RVDs as blue points connected by a black line. (C) Total weight of each RVD in the training data set.

Inline graphic — (A) The nucleotide preferences for position 0 are visualized as a sequence logo. (B) The binding specificities for the different RVDs are plotted in analogy to sequence logos as well, whereas the probabilities representing importance of RVDs are plotted against the RVDs as blue points connected by a black line. (C) Total weight of each RVD in the training data set.