Table 2.
Description of the novel miRNAs identified in this study
| Provisional ID | Total read count | Precursor coordinate | Genomic location | Gene | Type |
|---|---|---|---|---|---|
| chr1_2655 | 853 | chr1:172994721..172994783:− | Intron | Fcgr3 | shRNA (DGCR8−/−) |
| chr15_37558 | 788 | chr15:25877982..25878042:+ | Intron | Fam134b | Canonical |
| chrX_47068 | 292 | chrX:132281255..132281309:+ | Intron | Grasp1 | shRNA (DGCR8−/−) |
| chr5_14110 | 254 | chr5:123972645..123972704:− | Intron | Diablo | shRNA (DGCR8−/−) |
| chr15_38333 | 227 | chr15:90054791..90054844:+ | 5′-UTR | Alg10b | DGCR8−/− |
| chr6_17117 | 156 | chr6:128924857..128924913:− | Exon | AK040061 | Canonical |
| chr9_23196 | 146 | chr9:15117055..15117114:+ | Intron | Taf1d | shRNA |
| chr11_28442 | 136 | chr11:6301633..6301697:+ | Intron | Zmiz2 | Canonical |
| chr2_3181 | 117 | chr2:29701167..29701232:+ | Intergenic | Canonical | |
| chr5_11864 | 108 | chr5:34916800..34916863:+ | Intron | Add1 | Canonical |
| chr11_28874 | 101 | chr11:55314728..55314784:+ | Intron | G3bp1 | Canonical |
| chr11_29306 | 106 | chr11:77992329..77992390:+ | Span 5′-UTR-CDS | Tlcd1 | Canonical |
| chr8_21975 | 96 | chr8:8690092..8690162:− | CDS | Arglu1 | Canonical |
| chr2_3037 | 88 | chr2:17979473..17979531:+ | Intron | Mllt10 | shRNA (DGCR8−/−) |
| chr9_23976 | 76 | chr9:94652248..94652310:+ | Intron | Slc9a9 | Canonical |
| chr3_8489 | 93 | chr3:122244542..122244599:− | 3′-UTR | Fnbp1l | DGCR8−/− |
| chr4_11627 | 78 | chr4:155604167..155604224:− | CDS | Klhl17 | Canonical |
| chr15_39359 | 73 | chr15:79829399..79829456:− | Intron | Pdgfb | Canonical |
| chr10_27859 | 70 | chr10:77802894..77802952:− | Intron | Agpat3 | Canonical |
| chr6_15465 | 54 | chr6:115725675..115725738:+ | Intron | Cand2 | Canonical |
| chr6_15427 | 62 | chr6:108439737..108439798:+ | Intron | Itpr1 | Two-tailed mirtron |
| chr10_27686 | 49 | chr10:61656914..61656975:− | Intron | Tspan15 | Canonical |
| chr10_27394 | 41 | chr10:22449177..22449238:− | Intron | Tbpl1 | Canonical |
| chr2_3125 | 46 | chr2:24915331..24915394:+ | Intron | Nelf | Canonical |
| chr2_4218 | 45 | chr2:119843253..119843316:+ | Intron | Mapkbp1 | 5′-tailed mirtron |
| chr8_22282 | 700 | chr8:41393228..41393283:− | Intron | Fgf20 | shRNA (DGCR8−/−) |
| chr17_33821 | 390 | chr17:29732483..29732546:+ | Intron | Tbc1d22b | Canonical |
| chr7_14441 | 301 | chr7:30691528..30691587:+ | Intron | Zfp420 | shRNA (DGCR8−/−) |
| chr3_6937 | 176 | chr3:89815074..89815132:− | Intron | Ubap2l | Canonical |
| chr6_12274 | 109 | chr6:38457325..38457394:+ | Intron | Ubn2 | Canonical |
| chr11_24328 | 76 | chr11:53577098..53577156:− | Intergenic | Canonical | |
| chr14_30051 | 71 | chr14:27489032..27489094:− | Span 5′-UTR-CDS | Pde12 | Canonical |
| chrX_38038 | 46 | chrX:91519913..91519977:+ | Intron | Klhl15 | Canonical |
| chr7_14452 | 53 | chr7:31374399..31374457:+ | AS intron | Gapdhs | shRNA (DGCR8−/−) |
| chr2_3012 | 50 | chr2:31906466..31906529:+ | Intron | Nup214 | 5′-tailed mirtron |
| chr12_25218 | 42 | chr12:11306693..11306751:+ | Intron | Smc6 | Canonical |
| chr15_38048 | 519 | chr15:78179029..78179091:+ | CDS | Csf2rb2 | Canonical |
| chr15_39273 | 519 | chr15:78115217..78115279:− | CDS | Csf2rb2 | Canonical |
| chr2_4044 | 178 | chr2:94081535..94081600:+ | Intergenic | Canonical | |
| chr7_18793 | 171 | chr7:3219198..3219260:− | Intergenic | Canonical | |
| chr10_27945 | 179 | chr10:80878984..80879042:− | Intron | Nfic | Canonical |
| chr18_44110 | 44 | chr18:61113527..61113587:+ | Intron | Camk2a | Canonical |
| chr17_41247 | 24 | chr17:27228190..27228257:+ | Intron | Itpr3 | 5′-tailed mirtron |
| chr2_6270 | 36 | chr2:164180048..164180119:− | Intron | Slpi | 5′-tailed mirtron |
| chr11_30735 | 286 | chr11:82798504..82798567:− | Intron | Slfn9 | Canonical |
| chr16_40566 | 301 | chr16:21256085..21256139:− | Intron | AK043964 | Canonical |
| chr19_45771 | 77 | chr19:55267168..55267225:+ | Intron | Tectb | Canonical |
| chrX_47993 | 293 | chrX:146981927..146981988:− | Intron | Apex2 | Canonical |
| chrX_47598 | 369 | chrX:64075830..64075888:− | Intergenic | Canonical | |
| chr1_19965 | 56 | chr1:53906268..53906341:+ | AS intron | Hecw2 | Canonical |
| chr1_20693 | 305 | chr1:153289523..153289581:+ | Intron | Trm1l | Canonical |
| chr1_8658 | 1116 | chr1:173571968..173572033:− | Intron | Slamf7 | Canonical |
| chr11_4307 | 48 | chr11:28646198.28646265:− | Intergenic | Canonical | |
| chr15_6934_1 | 29 | chr15:82224348..82224409:− | Span 5′-UTR-CDS | Cyp2d11 | Canonical |
| chr15_6934_2 | 29 | chr15:82443316..82443377:− | Intergenic | Canonical | |
| chr15_6934_3 | 29 | chr15:82612504..82612572:+ | Span 5′-UTR-CDS | Cyp2d41 | Canonical |
| chr17_15196 | 347 | chr17:34161957..34162019:+ | Intron | M73959 | Canonical |
| chr2_13190 | 80 | chr2:26446881..26446942:− | AS intron | Egfl7 | Canonical |
| chr2_23582 | 185 | chr6:28972622..28972685:− | Intergenic | Canonical | |
| chr2_25696 | 52 | chr2:158069240..158069301:− | Intergenic | Canonical | |
| chr7_32398 | 1608 | chr7:147143465..147143521:− | Intergenic | Canonical | |
| chr7_6169 | 71 | chr7:3218640..3218696:− | Intergenic | Canonical | |
| chr8_40622 | 649 | chr8:123062596..123062654:+ | Intron | Gse1 | Canonical |
| chr18_17432 | 642 | chr18:56697793..56697853:− | Intron | Aldh7a1 | shRNA (DGCR8−/−) |
| chr10_1158 | 925 | chr10:92895852..92895909:+ | Intergenic | LTR ERV1 (DGCR8−/−) | |
| chr5_30975 | 581 | chr5:36644219..36644278:+ | AS intron | Sorcs2 | SINE Mirb (DGCR8−/−) |