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. 2013 Jan 21;41(5):3190–3200. doi: 10.1093/nar/gkt011

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© The Author(s) 2013. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — (A) Examples of TEs with significant homology to yeast and Drosophila genes. Black bars indicate TE ORFs, gray bars indicate the location of the homologous yeast/Drosophila genes. Wherever present, we used the ORF coordinates provided by RepBase; for the repeats where RepBase provides no gene prediction, we predicted the ORFs with Glimmer3. (B) The workflow used to determine whether the homology between a TE and a gene is a result of domestication or the incorporation of a host protein into a TE.