Table 2.
Major gene ontology biological process classifications represented by genes differentially expressed between control quarters from cows infected with E. coli (EC24T0) and S. aureus (SA24T0)
| Clone accession No. | Gene symbol | Gene | Fold difference |
|---|---|---|---|
|
CELLULAR COMPONENT ORGANIZATION AND BIOGENESIS | |||
|
EC24T0 > SA24T0 |
|
|
|
|
AM017607 |
ARPC5L |
actin related protein 2/3 complex, subunit 5-like |
2.52 |
|
CN821828 |
AGT |
angiotensinogen |
3.73 |
|
AM034974 |
BZW2 |
basic leucine zipper and W2 domains 2 |
2.48 |
|
BG693016 |
BTG1 |
B-cell translocation gene 1, anti-proliferative |
2.67 |
|
BF076579 |
BAX |
BCL2-associated X protein |
2.02 |
|
AJ818096 |
CEBPG |
CCAAT/enhancer binding protein (C/EBP), gamma |
2.19 |
|
CO888526 |
EMP1 |
epithelial membrane protein 1 |
2.30 |
|
CN824732 |
EIF1 |
eukaryotic translation initiation factor 1 |
2.08 |
|
CO894798 |
EIF1B |
eukaryotic translation initiation factor 1B |
2.03 |
|
CO888678 |
EIF3D |
eukaryotic translation initiation factor 3, subunit D |
2.03 |
|
AJ691100 |
EIF4A2 |
eukaryotic translation initiation factor 4A, isoform 2 |
2.52 |
|
CN823782 |
GABARAPL1 |
GABA(A) receptor-associated protein like 1 |
3.10 |
|
AJ818246 |
HSPD1 |
heat shock 60 kDa protein 1 |
2.34 |
|
AJ673268 |
HIST1H2AC |
histone cluster 1, H2ac |
3.30 |
|
CO884622 |
MID1IP1 |
MID1 interacting protein 1 |
2.18 |
|
AJ819252 |
MKI67IP |
MKI67 (FHA domain) interacting nucleolar phosphoprotein |
2.29 |
|
AJ673531 |
NDP |
Norrie disease |
3.44 |
|
AM037100 |
NUPR1 |
nuclear protein 1 |
2.27 |
|
CO888501 |
PDPK1 |
3-phosphoinositide dependent protein kinase-1 |
2.45 |
|
AM030492 |
PPP1R9B |
protein phosphatase 1, regulatory (inhibitor) subunit 9B |
2.63 |
|
CO890613 |
RAB43 |
RAB43, member RAS oncogene family |
2.29 |
|
AJ813402 |
SETD7 |
SET domain containing (lysine methyltransferase) 7 |
2.40 |
|
AJ813146 |
SNRPG |
small nuclear ribonucleoprotein polypeptide G |
2.73 |
|
CO886482 |
SLC3A2 |
solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 |
2.54 |
|
CO892251 |
SLC7A8 |
solute carrier family 7 (cationic amino acid transporter, y + system), member 8 |
4.39 |
|
CO890843 |
STOM |
stomatin |
3.65 |
|
CO880484 |
SNTA1 |
syntrophin, alpha 1 |
4.49 |
|
CO887666 |
UTP14A |
UTP14, U3 small nucleolar ribonucleoprotein, homolog A |
2.26 |
|
SA24T0 > EC24T0 |
|
|
|
|
CO889600 |
AMOT |
angiomotin |
2.12 |
|
CO889378 |
CNN1 |
calponin 1, basic, smooth muscle |
2.49 |
|
CN822971 |
CALR |
calreticulin |
2.36 |
|
BF604066 |
CD74 |
CD74 molecule, major histocompatibility complex, class II invariant chain |
2.43 |
|
CO888048 |
CXCL12 |
chemokine (C-X-C motif) ligand 12 |
3.23 |
|
CO202183 |
FEZ1 |
fasciculation and elongation protein zeta 1 |
3.13 |
|
CO873026 |
FLNA |
filamin A, alpha |
2.31 |
|
AJ692384 |
GLMN |
glomulin, FKBP associated protein |
2.01 |
|
CN824202 |
GSK3B |
glycogen synthase kinase 3 beta |
2.02 |
|
CO887046 |
LRRC4C |
leucine rich repeat containing 4C |
2.92 |
|
CO872154 |
LASP1 |
LIM and SH3 protein 1 |
2.09 |
|
AM025652 |
MRPL32 |
mitochondrial ribosomal protein L32 |
2.06 |
|
CO893984 |
MYO9B |
myosin IXB |
4.03 |
|
CO889939 |
MYH11 |
myosin, heavy chain 11, smooth muscle |
2.70 |
|
AM018723 |
PIGR |
polymeric immunoglobulin receptor |
2.03 |
|
AJ687977 |
SEC24D |
SEC24 related gene family, member D |
2.02 |
|
CO894656 |
SENP2 |
SUMO1/sentrin/SMT3 specific peptidase 2 |
3.32 |
|
CO876411 |
THY1 |
Thy-1 cell surface antigen |
2.10 |
| pTGFB1* |
TGFB1 |
transforming growth factor beta 1 |
2.32 |
|
AJ814326 |
B4GALT1 |
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1 |
2.45 |
|
AM033343 |
VIM |
vimentin |
2.36 |
|
CO880794 |
WIPF1 |
WAS/WASL interacting protein family, member 1 |
2.34 |
|
RESPONSE TO STRESS | |||
|
EC24T0 > SA24T0 |
|
|
|
|
AM006216 |
ATF4 |
activating transcription factor 4 |
2.07 |
|
CN821828 |
AGT |
angiotensinogen |
3.73 |
|
BF076579 |
BAX |
BCL2-associated X protein |
2.02 |
|
AJ818096 |
CEBPG |
CCAAT/enhancer binding protein (C/EBP), gamma |
2.19 |
|
BF606419 |
CXCL2 |
chemokine (C-X-C motif) ligand 2 |
2.03 |
|
CO889145 |
CSDA |
cold shock domain protein A |
3.16 |
|
CN824732 |
EIF1 |
eukaryotic translation initiation factor 1 |
2.08 |
|
CO892245 |
GADD45G |
growth arrest and DNA-damage-inducible, gamma |
2.91 |
|
AJ818246 |
HSPD1 |
heat shock 60 kDa protein 1 |
2.34 |
|
CN824191 |
HSP90AB1 |
heat shock protein 90 kDa alpha (cytosolic), class B member 1 |
2.25 |
|
AJ818172 |
HIF1A |
hypoxia-inducible factor 1, alpha subunit |
2.41 |
|
AM013900 |
LBP |
lipopolysaccharide binding protein |
2.79 |
|
CO888501 |
PDPK1 |
3-phosphoinositide dependent protein kinase-1 |
2.45 |
|
CN823413 |
SEPP1 |
selenoprotein P, plasma, 1 |
2.12 |
|
CO886480 |
STAT3 |
signal transducer and activator of transcription 3 |
2.25 |
|
AM025615 |
TRIB3 |
tribbles homolog 3 |
3.02 |
|
SA24T0 > EC24T0 |
|
|
|
|
CO888048 |
CXCL12 |
chemokine (C-X-C motif) ligand 12 |
3.23 |
|
CO883340 |
CFD |
complement factor D |
2.31 |
|
CN824202 |
GSK3B |
glycogen synthase kinase 3 beta |
2.02 |
|
AJ820250 |
IDH1 |
isocitrate dehydrogenase 1 (NADP+), soluble |
3.36 |
|
CO886661 |
RECQL5 |
RecQ protein-like 5 |
2.60 |
|
CO887968 |
TYMS |
thymidylate synthetase |
3.35 |
|
AJ695939 |
TFPI2 |
tissue factor pathway inhibitor 2 |
2.03 |
| pTGFB1* |
TGFB1 |
transforming growth factor beta 1 |
2.32 |
|
AJ814326 |
B4GALT1 |
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1 |
2.45 |
|
DEATH |
|
|
|
|
EC24T0 > SA24T0 |
|
|
|
|
CN821828 |
AGT |
angiotensinogen |
3.73 |
|
BG693016 |
BTG1 |
B-cell translocation gene 1, anti-proliferative |
2.67 |
|
BF076579 |
BAX |
BCL2-associated X protein |
2.02 |
|
AJ818096 |
CEBPG |
CCAAT/enhancer binding protein (C/EBP), gamma |
2.19 |
|
CO888526 |
EMP1 |
epithelial membrane protein 1 |
2.30 |
|
CO892245 |
GADD45G |
growth arrest and DNA-damage-inducible, gamma |
2.91 |
|
AJ818246 |
HSPD1 |
heat shock 60 kDa protein 1 |
2.34 |
|
AM037100 |
NUPR1 |
nuclear protein 1 |
2.27 |
|
CO883017 |
PHLPP |
PH domain and leucine rich repeat protein phosphatise |
2.26 |
|
CO885391 |
TAX1BP1 |
Tax1 (human T-cell leukemia virus type I) binding protein 1 |
3.05 |
|
AM025615 |
TRIB3 |
tribbles homolog 3 |
3.02 |
|
SA24T0 > EC24T0 |
|
|
|
|
CN822971 |
CALR |
calreticulin |
2.36 |
|
BF604066 |
CD74 |
CD74 molecule, major histocompatibility complex, class II invariant chain |
2.43 |
| pCSF2* |
CSF2 |
colony stimulating factor 2 (granulocyte-macrophage) |
2.57 |
|
CN824202 |
GSK3B |
glycogen synthase kinase 3 beta |
2.02 |
| pTGFB1* |
TGFB1 |
transforming growth factor beta 1 |
2.32 |
|
AJ814326 |
B4GALT1 |
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1 |
2.45 |
|
CELL ACTIVATION | |||
|
EC24T0 > SA24T0 |
|
|
|
|
CN821828 |
AGT |
angiotensinogen |
3.73 |
|
BF076579 |
BAX |
BCL2-associated X protein |
2.02 |
|
AJ818096 |
CEBPG |
CCAAT/enhancer binding protein (C/EBP), gamma |
2.19 |
|
SA24T0 > EC24T0 |
|
|
|
|
BF604066 |
CD74 |
CD74 molecule, major histocompatibility complex, class II invariant chain |
2.43 |
| pCSF2* |
CSF2 |
colony stimulating factor 2 (granulocyte-macrophage) |
2.57 |
|
AJ692384 |
GLMN |
glomulin, FKBP associated protein |
2.01 |
|
CO876411 |
THY1 |
Thy-1 cell surface antigen |
2.10 |
| pTGFB1* | TGFB1 | transforming growth factor beta 1 | 2.32 |
A single accession number is listed for genes represented by multiple clones. Average fold differences were calculated when multiple clones represented a transcript. * pTGFB1 and pCSF2 are amplicons generated specifically for the Bov20K cDNA microarray.