Table 4.
Summary of Zaykin’s z2 statistic based on LD correlation structures in HapMap CEU and GIH populations
| SNP (Gene) | Number of SNPs in the LD comparison matrix | Number of z2 values in random permutations greater than observed z2 value | Number of z2 values in random permutations lower than observed z2 value | Empirical p-value (one-sided test for difference in LD) |
|---|---|---|---|---|
| rs662799 (APOA5) |
25 |
4302 |
95699 |
0.04 |
| rs562338 (APOB) |
14 |
26258 |
73743 |
0.26 |
| rs1864163 (CETP) |
30 |
23107 |
76894 |
0.23 |
| rs780094 (GCKR) |
13 |
27258 |
72743 |
0.27 |
| rs6511720 (LDLR) |
6 |
17146 |
82855 |
0.17 |
| rs4775041 (LIPC) |
40 |
41804 |
58917 |
0.41 |
| rs10503669 (LPL) | 36 | 36613 | 63388 | 0.37 |